9AXD
HIV BG505.v5.2 (N289/N241) SOSIP Env in Complex with gp120-Interface pAb from Rh.33203
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (H) | gp120-Interface Polyclonal Antibody - Predicted Heavy Chain | polymer | 116 | 9890.2 | 1 | Macaca mulatta | ||
| 2 | B (L) | gp120-Interface Polyclonal Antibody - Predicted Light Chain | polymer | 105 | 8954.0 | 1 | Macaca mulatta | ||
| 3 | C, E, G (A, C, E) | Surface protein gp120 | polymer | 514 | 57775.8 | 3 | UniProt (Q2N0S6) | Human immunodeficiency virus 1 | BG505 SOSIP.v5.2 gp120 |
| 4 | D, F, H (B, D, F) | Transmembrane protein gp41 | polymer | 155 | 17507.0 | 3 | UniProt (Q2N0S6) UniProt (by SIFTS) (D0PUM0) | Human immunodeficiency virus 1 | BG505.v5.2 gp41 |
| 5 | AA, BA, CA, EA, FA... (a, b, c, e, f...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 23 | In PDB GlyTouCan (G42666HT) | |||
| 6 | DA, J, T (d, I, T) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB GlyTouCan (G22768VO) | |||
| 7 | N (N) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 627.6 | 1 | In PDB | |||
| 8 | AB, BB, CB, DB, EB... (C, D, A, E, F...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 40 | Chemie (NAG) |
Sequence modifications
A, C, E: 31 - 510 (UniProt: Q2N0S6)
B, D, F: 510 - 664 (UniProt: Q2N0S6)
| PDB | External Database | Details |
|---|---|---|
| Met -4 | - | initiating methionine |
| Asp -3 | - | expression tag |
| Ala -2 | - | expression tag |
| Met -1 | - | expression tag |
| Lys 0 | - | expression tag |
| Arg 1 | - | expression tag |
| Gly 2 | - | expression tag |
| Leu 3 | - | expression tag |
| Cys 4 | - | expression tag |
| Cys 5 | - | expression tag |
| Val 6 | - | expression tag |
| Leu 7 | - | expression tag |
| Leu 8 | - | expression tag |
| Leu 9 | - | expression tag |
| Cys 10 | - | expression tag |
| Gly 11 | - | expression tag |
| Ala 12 | - | expression tag |
| Val 13 | - | expression tag |
| Phe 14 | - | expression tag |
| Val 15 | - | expression tag |
| Ser 16 | - | expression tag |
| Pro 17 | - | expression tag |
| Ser 18 | - | expression tag |
| Gln 19 | - | expression tag |
| Glu 20 | - | expression tag |
| Ile 21 | - | expression tag |
| His 22 | - | expression tag |
| Ala 23 | - | expression tag |
| Arg 24 | - | expression tag |
| Phe 25 | - | expression tag |
| Arg 26 | - | expression tag |
| Arg 27 | - | expression tag |
| Gly 28 | - | expression tag |
| Ala 29 | - | expression tag |
| Arg 30 | - | expression tag |
| Lys 64 | Glu 63 | conflict |
| Cys 73 | Ala 72 | conflict |
| Thr 240 | Pro 239 | conflict |
| Asn 241 | Ser 240 | conflict |
| Ile 271 | Met 270 | conflict |
| Leu 288 | Phe 287 | conflict |
| Glu 290 | Thr 289 | conflict |
| Ser 291 | Pro 290 | conflict |
| Trp 314 | Ala 313 | conflict |
| Asn 331 | Thr 330 | conflict |
| Cys 500 | Ala 498 | conflict |
| Arg 508 | Glu 506 | conflict |
| Arg 509 | Lys 507 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 510 | Lys 507 | conflict |
| Pro 559 | Ile 556 | conflict |
| Cys 561 | Ala 558 | conflict |
| Cys 605 | Thr 602 | conflict |
| Thr 613 | Ser 610 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 244692.4 | |
| Branched | Number of molecules | 27 |
| Total formula weight | 13121.3 | |
| Non-Polymers* | Number of molecules | 40 |
| Total formula weight | 8848.3 | |
| All* | Total formula weight | 266662.0 |
