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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9AUH

Cryo-EM structure of CH848.d949.10.17.GS-DH270.UCA3

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C
(A, B, C)		HIV-1 BG505 DS-SOSIP glycoprotein gp120polymer46952505.53UniProt (Q2N0S6)
Pfam (PF00516)
UniProt (by SIFTS) (A0A1W6IPB2)		Human immunodeficiency virus 1Env polyprotein
2D, E, F
(D, E, F)		HIV-1 BG505 DS-SOSIP glycoprotein gp41polymer15317146.53UniProt (Q2N0S6)
Pfam (PF00517)
UniProt (by SIFTS) (D0PUM0)		Human immunodeficiency virus 1Env polyproten
3G, H, I
(G, H, I)		UCA3 heavy chainpolymer23224980.93Homo sapiens
4J, K, L
(J, K, L)		UCA3 light chainpolymer21622719.13Homo sapiens
5M, Q, U
(M, Q, U)		alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched910.83In PDB
GlyTouCan (G22768VO)
6N
(N)		alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched1559.41In PDB
GlyTouCan (G68668TB)
7O, S, W
(O, S, W)		beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched586.53In PDB
GlyTouCan (G15407YE)
8P, T, X
(P, T, X)		2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.43In PDB
GlyTouCan (G42666HT)
9R, V
(R, V)		alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched1397.22In PDB
GlyTouCan (G80966KZ)
10AA, AB, BA, BB, CA...
(A, C, B)		2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.230Chemie (NAG)
Sequence modifications
A, B, C: 31 - 498 (UniProt: Q2N0S6)
PDBExternal DatabaseDetails
Glu 47Asp 46conflict
Lys 49Glu 48conflict
Arg 59Lys 58conflict
Lys 63Thr 62conflict
Val 65Lys 64conflict
Ser 80Asn 79conflict
Leu 84Ile 83conflict
Val 85His 84conflict
Gly 87Glu 86conflict
Asn 92Glu 91conflict
Asp 99Asn 98conflict
Asp 102Glu 101conflict
Glu 106Thr 105conflict
Ile 130Gln 129conflict
-Thr 131deletion
-Asn 132deletion
-Val 133deletion
-Thr 134deletion
-Asn 135deletion
-Asn 136deletion
-Ile 137deletion
Ser 132Thr 138conflict
Ala 134Asp 140conflict
Gly 135Met 141conflict
Ser 136Arg 142conflict
Gly 138-insertion
Val 149-insertion
Glu 150-insertion
Met 154Leu 145conflict
Thr 161Met 152conflict
Ile 165Leu 156conflict
Glu 169Lys 160conflict
Lys 170Gln 161conflict
Glu 172Val 163conflict
Ala 174Ser 165conflict
Lys 178Arg 169conflict
Pro 179Leu 170conflict
Ile 181Val 172conflict
Pro 183Gln 174conflict
Leu 184Ile 175conflict
Ser 185Asn 176conflict
-Asn 178deletion
-Gln 179deletion
-Gly 180deletion
-Asn 181deletion
-Arg 182deletion
-Ser 183deletion
Thr 185Asn 184conflict
Asn 187Ser 186conflict
Thr 188Asn 187conflict
Ser 189Lys 188conflict
Cys 201Ile 200conflict
Thr 209Ser 208conflict
Tyr 223Phe 222conflict
Asn 229Lys 228conflict
Glu 231Lys 230conflict
Thr 232Lys 231conflict
Ser 240Pro 239conflict
Asn 241Ser 240conflict
Arg 252Lys 251conflict
Lys 268Glu 267conflict
Ile 270Val 269conflict
Val 271Met 270conflict
Leu 277Ile 276conflict
Ile 283Asn 282conflict
Ile 285Leu 284conflict
His 287Gln 286conflict
Leu 288Phe 287conflict
His 289Asn 288conflict
Glu 293Gln 292conflict
Val 295Asn 294conflict
Val 307Ile 306conflict
Thr 316Ala 313conflict
Lys 327Arg 325conflict
Asn 332Thr 330conflict
Ile 333Val 331conflict
Glu 335Lys 333conflict
Glu 336Ala 334conflict
Lys 337Thr 335conflict
Asp 340Glu 338conflict
Gln 343Gly 341conflict
Gly 346Val 344conflict
Ile 347Lys 345conflict
Glu 348Gln 346conflict
Gln 350Arg 348conflict
Pro 354Gly 352conflict
Lys 356Asn 354conflict
-Ile 357deletion
-Arg 358deletion
Lys 360Phe 359conflict
Tyr 361Ala 360conflict
Gln 363-insertion
Ala 365Ser 363conflict
Met 369Leu 367conflict
Ile 371Val 369conflict
Asn 389Gly 387conflict
Asn 392-insertion
Gly 393-insertion
Thr 394-insertion
Tyr 395-insertion
Gly 397Ser 391conflict
Tyr 400Trp 393conflict
Thr 403Asn 396conflict
Asn 404Thr 397conflict
Ser 406Val 399conflict
Ala 407Gln 400conflict
Asn 408Gly 401conflict
Thr 411Asn 403conflict
-Gly 406deletion
-Ser 407deletion
-Asn 408deletion
-Asp 409deletion
-Ser 410deletion
Gln 417Pro 414conflict
Gly 429Arg 426conflict
Val 430Ile 427conflict
Arg 432Gln 429conflict
Cys 433Ala 430conflict
Ala 440Gln 437conflict
Asn 442Val 439conflict
Thr 444Arg 441conflict
Arg 446Val 443conflict
Leu 453Ile 450conflict
Thr 460Ser 457conflict
Asn 461Thr 458conflict
Ser 462Asn 459conflict
Asn 463Ser 460conflict
Glu 464Thr 461conflict
Ala 471Gly 468conflict
Thr 499-expression tag
Arg 500-expression tag
Cys 501-expression tag
Lys 502-expression tag
Arg 503-expression tag
Arg 504-expression tag
Val 505-expression tag
Val 506-expression tag
Gly 507-expression tag
Arg 508-expression tag
Arg 509-expression tag
Arg 510-expression tag
Arg 511-expression tag
Arg 512-expression tag
Arg 513-expression tag
D, E, F: 512 - 664 (UniProt: Q2N0S6)
PDBExternal DatabaseDetails
Pro 559Ile 556conflict
Cys 605Thr 602conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains12
Total formula weight352056.0
BranchedNumber of molecules12
Total formula weight10119.2
Non-Polymers*Number of molecules30
Total formula weight6636.2
All*Total formula weight368811.4
*Water molecules are not included.

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PDB entries from 2025-06-18

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