9ATO
XBB.1.5 spike/Nanosota-3C complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1230 | 136647.5 | 3 | UniProt (P0DTC2) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
2 | D, F, L | Nanosota-3C | polymer | 136 | 14883.4 | 3 | Vicugna pacos | ||
3 | G, H, I, J, K... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 15 | In PDB GlyTouCan (G42666HT) | |||
4 | B, C, A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 10 | Chemie (NAG) |
Sequence modifications
A, B, C: 14 - 1207 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Ile 19 | Thr 19 | variant |
- | Leu 24 | deletion |
- | Pro 25 | deletion |
- | Pro 26 | deletion |
Ser 24 | Ala 27 | variant |
Ala 80 | Val 83 | variant |
Asp 139 | Gly 142 | variant |
- | Tyr 144 | deletion |
Gln 142 | His 146 | variant |
Glu 179 | Gln 183 | variant |
Glu 209 | Val 213 | variant |
His 335 | Gly 339 | variant |
Thr 342 | Arg 346 | variant |
Ile 364 | Leu 368 | variant |
Phe 367 | Ser 371 | variant |
Pro 369 | Ser 373 | variant |
Phe 371 | Ser 375 | variant |
Ala 372 | Thr 376 | variant |
Asn 401 | Asp 405 | variant |
Ser 404 | Arg 408 | variant |
Asn 413 | Lys 417 | variant |
Lys 436 | Asn 440 | variant |
Pro 441 | Val 445 | variant |
Ser 442 | Gly 446 | variant |
Lys 456 | Asn 460 | variant |
Asn 473 | Ser 477 | variant |
Lys 474 | Thr 478 | variant |
Ala 480 | Glu 484 | variant |
Pro 482 | Phe 486 | variant |
Ser 486 | Phe 490 | variant |
Arg 494 | Gln 498 | variant |
Tyr 497 | Asn 501 | variant |
His 501 | Tyr 505 | variant |
Gly 610 | Asp 614 | variant |
Tyr 651 | His 655 | variant |
Lys 675 | Asn 679 | variant |
His 677 | Pro 681 | variant |
Ala 678 | Arg 682 | engineered mutation |
Gly 679 | Arg 683 | engineered mutation |
Lys 760 | Asn 764 | variant |
Tyr 792 | Asp 796 | variant |
Pro 813 | Phe 817 | engineered mutation |
Pro 888 | Ala 892 | engineered mutation |
Pro 895 | Ala 899 | engineered mutation |
Pro 938 | Ala 942 | engineered mutation |
His 950 | Gln 954 | variant |
Lys 965 | Asn 969 | variant |
Pro 982 | Lys 986 | engineered mutation |
Pro 983 | Val 987 | engineered mutation |
Gly 1208 | - | expression tag |
Ser 1209 | - | expression tag |
Gly 1210 | - | expression tag |
Tyr 1211 | - | expression tag |
Ile 1212 | - | expression tag |
Pro 1213 | - | expression tag |
Glu 1214 | - | expression tag |
Ala 1215 | - | expression tag |
Pro 1216 | - | expression tag |
Arg 1217 | - | expression tag |
Asp 1218 | - | expression tag |
Gly 1219 | - | expression tag |
Gln 1220 | - | expression tag |
Ala 1221 | - | expression tag |
Tyr 1222 | - | expression tag |
Val 1223 | - | expression tag |
Arg 1224 | - | expression tag |
Lys 1225 | - | expression tag |
Asp 1226 | - | expression tag |
Gly 1227 | - | expression tag |
Glu 1228 | - | expression tag |
Trp 1229 | - | expression tag |
Val 1230 | - | expression tag |
Leu 1231 | - | expression tag |
Leu 1232 | - | expression tag |
Ser 1233 | - | expression tag |
Thr 1234 | - | expression tag |
Phe 1235 | - | expression tag |
Leu 1236 | - | expression tag |
Gly 1237 | - | expression tag |
His 1238 | - | expression tag |
His 1239 | - | expression tag |
His 1240 | - | expression tag |
His 1241 | - | expression tag |
His 1242 | - | expression tag |
His 1243 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 454592.7 | |
Branched | Number of molecules | 15 |
Total formula weight | 6366.0 | |
Non-Polymers* | Number of molecules | 10 |
Total formula weight | 2212.1 | |
All* | Total formula weight | 463170.8 |