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8ZV9

Complex structure of HLA2402 with recognizing SARS-CoV-2 Y453F epitope NYNYLFRLF

Replaces:  8IF1
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, D, G
(A, D, G)
MHC class I antigenpolymer28032136.53UniProt (A0A7T3RIT5)
Pfam (PF00129)
Pfam (PF07654)
Homo sapiens (human)
2B, E, H
(B, E, H)
Beta-2-microglobulinpolymer10011879.43UniProt (P61769)
Pfam (PF07654)
Homo sapiens (human)
3C, F, I
(C, F, I)
Spike protein S1polymer91250.43UniProt (P0DTC2)Severe acute respiratory syndrome coronavirus 2
4J, K
(A)
1,2-ETHANEDIOLnon-polymer62.12Chemie (EDO)
5L, M, N, O, P...
(A, B, C, D, E...)
waterwater18.0378Chemie (HOH)
Sequence modifications
A, D, G: 1 - 276 (UniProt: A0A7T3RIT5)
PDBExternal DatabaseDetails
Ser -2-expression tag
Val -1-expression tag
Asp 0-expression tag
Gly 277-expression tag
B, E, H: 1 - 99 (UniProt: P61769)
PDBExternal DatabaseDetails
Met 0-expression tag
C, F, I: 1 - 9 (UniProt: P0DTC2)
PDBExternal DatabaseDetails
Phe 6Tyr 453engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains9
Total formula weight135798.7
Non-Polymers*Number of molecules2
Total formula weight124.1
All*Total formula weight135922.9
*Water molecules are not included.

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PDB entries from 2025-06-25

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