8ZOG
Structure of the astaxanthin mutant PSI-9VCPI supercomplex in Nannochloropsis oceanica
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (5) | VCPI-5 | polymer | 244 | 25849.2 | 1 | Nannochloropsis oceanica strain IMET1 | ||
| 2 | B (9) | VCPI-9 | polymer | 232 | 24176.0 | 1 | Nannochloropsis oceanica strain IMET1 | ||
| 3 | C (8) | VCPI-8 | polymer | 200 | 21633.4 | 1 | Nannochloropsis oceanica strain IMET1 | ||
| 4 | D, H (4, 7) | VCPI-4/7 | polymer | 202 | 21611.3 | 2 | Nannochloropsis oceanica strain IMET1 | ||
| 5 | E (3) | VCPI-3 | polymer | 220 | 23046.8 | 1 | Nannochloropsis oceanica strain IMET1 | ||
| 6 | F (6) | VCPI-6 | polymer | 259 | 27655.7 | 1 | Nannochloropsis oceanica strain IMET1 | ||
| 7 | G (2) | VCPI-2 | polymer | 223 | 23865.6 | 1 | Nannochloropsis oceanica strain IMET1 | ||
| 8 | I (1) | VCPI-1 | polymer | 208 | 22652.1 | 1 | Nannochloropsis oceanica strain IMET1 | ||
| 9 | J (a) | Photosystem I P700 chlorophyll a apoprotein A1 | polymer | 745 | 82797.8 | 1 | UniProt (T1RJP7) | Nannochloropsis oceanica strain IMET1 | PSI-A,PsaA |
| 10 | K (b) | Photosystem I P700 chlorophyll a apoprotein A2 | polymer | 737 | 82865.0 | 1 | UniProt (T1RIQ1) | Nannochloropsis oceanica strain IMET1 | PSI-B,PsaB |
| 11 | L (d) | Photosystem I reaction center subunit II | polymer | 136 | 15037.2 | 1 | UniProt (T1RIT2) | Nannochloropsis oceanica strain IMET1 | |
| 12 | M (e) | Photosystem I reaction center subunit IV | polymer | 67 | 7668.7 | 1 | UniProt (T1RJT6) | Nannochloropsis oceanica strain IMET1 | Photosystem I subunit IV |
| 13 | N (f) | Photosystem I reaction center subunit III | polymer | 185 | 20813.1 | 1 | UniProt (T1RJ05) | Nannochloropsis oceanica strain IMET1 | PSI-F |
| 14 | O (h) | PsaR | polymer | 128 | 13958.5 | 1 | Nannochloropsis oceanica strain IMET1 | ||
| 15 | P (i) | Photosystem I reaction center subunit VIII | polymer | 45 | 5226.2 | 1 | UniProt (T1RJ07) | Nannochloropsis oceanica strain IMET1 | PSI-I |
| 16 | Q (j) | Photosystem I reaction center subunit IX | polymer | 41 | 4762.6 | 1 | UniProt (T1RJW8) | Nannochloropsis oceanica strain IMET1 | PSI-J |
| 17 | R (l) | PSI subunit V | polymer | 172 | 18695.6 | 1 | UniProt (T1RJZ1) | Nannochloropsis oceanica strain IMET1 | |
| 18 | S (m) | PsaM | polymer | 30 | 3241.9 | 1 | UniProt (by SIFTS) (A0A8F5PPL2) | Nannochloropsis oceanica strain IMET1 | |
| 19 | T (g) | PsaS | polymer | 55 | 4698.8 | 1 | Nannochloropsis oceanica strain IMET1 | ||
| 20 | U (c) | Photosystem I iron-sulfur center | polymer | 81 | 8763.1 | 1 | UniProt (T1RJY1) | Nannochloropsis oceanica strain IMET1 | 9 kDa polypeptide,PSI-C,Photosystem I subunit VII,PsaC |
| 21 | BD, CB, CD, DB, EB... (6, 8, 7, 3, a...) | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 35 | Chemie (XAT) | |||
| 22 | FE, JC, MA, NC, RA... (7, 3, 9, 1, 5) | (1~{R},3~{S})-6-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{Z},17~{E})-16-(hydroxymethyl)-3,7,12-trimethyl-18-[(1~{S},4~{S},6~{R})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]-1,5,5-trimethyl-cyclohexane-1,3-diol | non-polymer | 616.9 | 7 | Chemie (A1L1G) | |||
| 23 | AA, AB, AC, AE, AF... (5, 9, 4, 2, 1...) | CHLOROPHYLL A | non-polymer | 893.5 | 188 | Chemie (CLA) | |||
| 24 | JF, LA (1, 5) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 2 | Chemie (SQD) | |||
| 25 | AD, FB, NA, UJ, XC... (6, 8, 9, h, 1) | [(2~{Z},4~{E},6~{E},8~{E},10~{E},12~{E},14~{E})-17-[(4~{S},6~{R})-4-acetyloxy-2,2,6-trimethyl-6-oxidanyl-cyclohexylidene]-6,11,15-trimethyl-2-[(~{E})-2-[(1~{S},4~{S},6~{R})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethenyl]heptadeca-2,4,6,8,10,12,14,16-octaenyl] octanoate | non-polymer | 785.1 | 6 | Chemie (A1L1F) | |||
| 26 | CH, DH, EK, KJ, SA (a, m, b, 9) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 5 | Chemie (LHG) | |||
| 27 | HC, MJ, QB (4, b, 8) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 3 | Chemie (DGD) | |||
| 28 | AK, DE, MH (j, 2, a) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 3 | Chemie (LMG) | |||
| 29 | AH, DJ (a, b) | PHYLLOQUINONE | non-polymer | 450.7 | 2 | Chemie (PQN) | |||
| 30 | EH, EJ, FH, FJ, FK... (a, b, m, f, i...) | BETA-CAROTENE | non-polymer | 536.9 | 19 | Chemie (BCR) | |||
| 31 | GK, HK, IH (c, a) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 3 | Chemie (SF4) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 21 |
| Total formula weight | 480629.8 | |
| Non-Polymers* | Number of molecules | 273 |
| Total formula weight | 220606.4 | |
| All* | Total formula weight | 701236.3 |
