8ZOB
Structure of the wild-type PSI-5VCPI supercomplex in Nannochloropsis oceanica
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (5) | VCPI-5 | polymer | 244 | 25849.2 | 1 | Nannochloropsis oceanica strain IMET1 | ||
| 2 | B (4) | VCPI-4 | polymer | 202 | 21611.3 | 1 | Nannochloropsis oceanica strain IMET1 | ||
| 3 | C (3) | VCPI-3 | polymer | 220 | 23046.8 | 1 | Nannochloropsis oceanica strain IMET1 | ||
| 4 | D (2) | VCPI-2 | polymer | 223 | 23865.6 | 1 | Nannochloropsis oceanica strain IMET1 | ||
| 5 | E (1) | VCPI-1 | polymer | 208 | 22652.1 | 1 | Nannochloropsis oceanica strain IMET1 | ||
| 6 | F (a) | Photosystem I P700 chlorophyll a apoprotein A1 | polymer | 745 | 82797.8 | 1 | UniProt (T1RJP7) | Nannochloropsis oceanica strain IMET1 | PSI-A,PsaA |
| 7 | G (b) | Photosystem I P700 chlorophyll a apoprotein A2 | polymer | 737 | 82865.0 | 1 | UniProt (T1RIQ1) | Nannochloropsis oceanica strain IMET1 | PSI-B,PsaB |
| 8 | H (d) | Photosystem I reaction center subunit II | polymer | 136 | 15037.2 | 1 | UniProt (T1RIT2) | Nannochloropsis oceanica strain IMET1 | |
| 9 | I (e) | Photosystem I reaction center subunit IV | polymer | 67 | 7668.7 | 1 | UniProt (T1RJT6) | Nannochloropsis oceanica strain IMET1 | Photosystem I subunit IV |
| 10 | J (f) | Photosystem I reaction center subunit III | polymer | 185 | 20813.1 | 1 | UniProt (T1RJ05) | Nannochloropsis oceanica strain IMET1 | PSI-F |
| 11 | K (i) | Photosystem I reaction center subunit VIII | polymer | 45 | 5226.2 | 1 | UniProt (T1RJ07) | Nannochloropsis oceanica strain IMET1 | PSI-I |
| 12 | L (j) | Photosystem I reaction center subunit IX | polymer | 41 | 4762.6 | 1 | UniProt (T1RJW8) | Nannochloropsis oceanica strain IMET1 | PSI-J |
| 13 | M (l) | PSI subunit V | polymer | 172 | 18695.6 | 1 | UniProt (T1RJZ1) | Nannochloropsis oceanica strain IMET1 | |
| 14 | N (m) | PsaM | polymer | 30 | 3241.9 | 1 | Nannochloropsis oceanica strain IMET1 | ||
| 15 | O (g) | PsaS | polymer | 55 | 4698.8 | 1 | Nannochloropsis oceanica strain IMET1 | ||
| 16 | P (c) | Photosystem I iron-sulfur center | polymer | 81 | 8763.1 | 1 | UniProt (T1RJY1) | Nannochloropsis oceanica strain IMET1 | 9 kDa polypeptide,PSI-C,Photosystem I subunit VII,PsaC |
| 17 | AB, BB, BH, CB, FC... (3, j, 1, 4, 2...) | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 21 | Chemie (XAT) | |||
| 18 | DB, EC, S, ZA (3, 1, 5) | (1~{R},3~{S})-6-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{Z},17~{E})-16-(hydroxymethyl)-3,7,12-trimethyl-18-[(1~{S},4~{S},6~{R})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]-1,5,5-trimethyl-cyclohexane-1,3-diol | non-polymer | 616.9 | 4 | Chemie (A1L1G) | |||
| 19 | AA, AC, AD, AE, AF... (5, 2, a, b, i...) | CHLOROPHYLL A | non-polymer | 893.5 | 146 | Chemie (CLA) | |||
| 20 | FA, SC (5, 1) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 2 | Chemie (SQD) | |||
| 21 | TG, XA (b, 4) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 2 | Chemie (DGD) | |||
| 22 | DC, FH, TE (2, j, a) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 3 | Chemie (LMG) | |||
| 23 | HC (1) | [(2~{Z},4~{E},6~{E},8~{E},10~{E},12~{E},14~{E})-17-[(4~{S},6~{R})-4-acetyloxy-2,2,6-trimethyl-6-oxidanyl-cyclohexylidene]-6,11,15-trimethyl-2-[(~{E})-2-[(1~{S},4~{S},6~{R})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethenyl]heptadeca-2,4,6,8,10,12,14,16-octaenyl] octanoate | non-polymer | 785.1 | 1 | Chemie (A1L1F) | |||
| 24 | JE, KG (a, b) | PHYLLOQUINONE | non-polymer | 450.7 | 2 | Chemie (PQN) | |||
| 25 | LE, LH, ME, RG (a, m, b) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 4 | Chemie (LHG) | |||
| 26 | EH, GH, KH, LG, MG... (j, l, b, m, a...) | BETA-CAROTENE | non-polymer | 536.9 | 19 | Chemie (BCR) | |||
| 27 | NH, OH, RE (c, a) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 3 | Chemie (SF4) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 16 |
| Total formula weight | 371594.9 | |
| Non-Polymers* | Number of molecules | 207 |
| Total formula weight | 167219.3 | |
| All* | Total formula weight | 538814.2 |
