8ZMP
Cryo-EM structure of the spike glycoprotein from Bat SARS-like coronavirus (Bat SL-CoV) WIV1 in locked state
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1213 | 134758.3 | 3 | UniProt (U5WHZ7) UniProt (by SIFTS) (U5WI05) | Bat SARS-like coronavirus WIV1 | S glycoprotein,E2,Peplomer protein |
| 2 | AA, BA, CA, D, DA... (a, b, c, D, d...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 21 | In PDB GlyTouCan (G42666HT) | |||
| 3 | E, N, W (E, N, W) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
| 4 | G, P, Y (G, P, Y) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 3 | In PDB GlyTouCan (G81315DD) | |||
| 5 | EA, NA, WA (A, B, C) | LINOLEIC ACID | non-polymer | 280.4 | 3 | Chemie (EIC) | |||
| 6 | AB, BB, CB, DB, EB... (C, A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 24 | Chemie (NAG) |
Sequence modifications
A, B, C: 19 - 1194 (UniProt: U5WHZ7)
| PDB | External Database | Details |
|---|---|---|
| Met 18 | - | initiating methionine |
| His 623 | Tyr 623 | conflict |
| Asp 1167 | Asn 1167 | conflict |
| Gly 1195 | - | expression tag |
| Gly 1196 | - | expression tag |
| Ser 1197 | - | expression tag |
| Gly 1198 | - | expression tag |
| Tyr 1199 | - | expression tag |
| Ile 1200 | - | expression tag |
| Pro 1201 | - | expression tag |
| Glu 1202 | - | expression tag |
| Ala 1203 | - | expression tag |
| Pro 1204 | - | expression tag |
| Arg 1205 | - | expression tag |
| Asp 1206 | - | expression tag |
| Gly 1207 | - | expression tag |
| Gln 1208 | - | expression tag |
| Ala 1209 | - | expression tag |
| Tyr 1210 | - | expression tag |
| Val 1211 | - | expression tag |
| Arg 1212 | - | expression tag |
| Lys 1213 | - | expression tag |
| Asp 1214 | - | expression tag |
| Gly 1215 | - | expression tag |
| Glu 1216 | - | expression tag |
| Trp 1217 | - | expression tag |
| Val 1218 | - | expression tag |
| Leu 1219 | - | expression tag |
| Leu 1220 | - | expression tag |
| Ser 1221 | - | expression tag |
| Thr 1222 | - | expression tag |
| Phe 1223 | - | expression tag |
| Leu 1224 | - | expression tag |
| His 1225 | - | expression tag |
| His 1226 | - | expression tag |
| His 1227 | - | expression tag |
| His 1228 | - | expression tag |
| His 1229 | - | expression tag |
| His 1230 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 404274.9 | |
| Branched | Number of molecules | 27 |
| Total formula weight | 12918.1 | |
| Non-Polymers* | Number of molecules | 27 |
| Total formula weight | 6150.3 | |
| All* | Total formula weight | 423343.4 |
