8ZJR
Structure of nucleosome-bound RFX5 complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E (A, E) | Histone H3.2 | polymer | 138 | 15543.2 | 2 | UniProt (Q71DI3) Pfam (PF00125) | Homo sapiens (human) | H3-clustered histone 13,H3-clustered histone 14,H3-clustered histone 15,Histone H3/m,Histone H3/o |
| 2 | B, F (B, F) | Histone H4 | polymer | 107 | 11824.9 | 2 | UniProt (P62805) Pfam (PF15511) | Homo sapiens (human) | |
| 3 | C, G (C, G) | Histone H2A type 1-B/E | polymer | 132 | 14319.7 | 2 | UniProt (P04908) Pfam (PF00125) Pfam (PF16211) | Homo sapiens (human) | Histone H2A.2,Histone H2A/a,Histone H2A/m |
| 4 | D, H (D, H) | Histone H2B type 1-K | polymer | 130 | 14351.7 | 2 | UniProt (O60814) Pfam (PF00125) | Homo sapiens (human) | H2B K,HIRA-interacting protein 1 |
| 5 | I (I) | DNA (147-MER) | polymer | 147 | 45664.1 | 1 | synthetic construct | ||
| 6 | J (J) | DNA (147-MER) | polymer | 147 | 45081.8 | 1 | synthetic construct | ||
| 7 | K (M) | DNA-binding protein RFX5 | polymer | 148 | 16992.2 | 1 | UniProt (P48382) Pfam (PF18326) Pfam (PF02257) | Homo sapiens (human) | Regulatory factor X 5 |
Sequence modifications
A, E: 1 - 136 (UniProt: Q71DI3)
B, F: 1 - 103 (UniProt: P62805)
C, G: 1 - 130 (UniProt: P04908)
D, H: 1 - 126 (UniProt: O60814)
M: 57 - 188 (UniProt: P48382)
| PDB | External Database | Details |
|---|---|---|
| Gly -1 | - | expression tag |
| Pro 0 | - | expression tag |
| Ala 111 | Cys 111 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Met -3 | - | initiating methionine |
| Ala -2 | - | expression tag |
| Asp -1 | - | expression tag |
| Leu 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly -1 | - | expression tag |
| Pro 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met -3 | - | initiating methionine |
| Ala -2 | - | expression tag |
| Asp -1 | - | expression tag |
| Leu 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met 41 | - | initiating methionine |
| Gly 42 | - | expression tag |
| Ser 43 | - | expression tag |
| Ser 44 | - | expression tag |
| His 45 | - | expression tag |
| His 46 | - | expression tag |
| His 47 | - | expression tag |
| His 48 | - | expression tag |
| His 49 | - | expression tag |
| Glu 50 | - | expression tag |
| Asn 51 | - | expression tag |
| Leu 52 | - | expression tag |
| Tyr 53 | - | expression tag |
| Phe 54 | - | expression tag |
| Gln 55 | - | expression tag |
| Gly 56 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 11 |
| Total formula weight | 219817.3 | |
| All* | Total formula weight | 219817.3 |
