8ZHM
SARS-CoV-2 spike trimer (6P) in complex with three H18 and three R1-32 Fabs
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein,Fibritin,Expression Tag | polymer | 1278 | 141253.9 | 3 | UniProt (P0DTC2) UniProt (A0A346FJN8) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | S glycoprotein,E2,Peplomer protein,Phage neck whiskers protein |
2 | H, G, N | Heavy chain of R1-32 Fab | polymer | 228 | 23840.7 | 3 | Homo sapiens (human) | ||
3 | L, I, O | Light chain of R1-32 Fab | polymer | 214 | 22382.6 | 3 | Homo sapiens (human) | ||
4 | D, F, K | Light chain of H18 Fab | polymer | 243 | 25768.5 | 3 | Homo sapiens (human) | ||
5 | E, J, M | Heavy chain of H18 Fab | polymer | 243 | 25868.3 | 3 | Homo sapiens (human) | ||
6 | a, P, Q, R, S... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
7 | C, A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 33 | Chemie (NAG) |
Sequence modifications
A, B, C: 11 - 1208 (UniProt: P0DTC2)
A, B, C: 1211 - 1237 (UniProt: A0A346FJN8)
A, B, C: 1238 - 1288 (PDB: 8ZHM)
PDB | External Database | Details |
---|---|---|
Gly 682 | Arg 682 | conflict |
Ser 683 | Arg 683 | conflict |
Ser 685 | Arg 685 | conflict |
Pro 817 | Phe 817 | conflict |
Pro 892 | Ala 892 | conflict |
Pro 899 | Ala 899 | conflict |
Pro 942 | Ala 942 | conflict |
Pro 986 | Lys 986 | variant |
Pro 987 | Val 987 | variant |
Gly 1209 | - | linker |
Ser 1210 | - | linker |
A, B, C: 1238 - 1288 (PDB: 8ZHM)
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 15 |
Total formula weight | 717342.1 | |
Branched | Number of molecules | 12 |
Total formula weight | 5092.8 | |
Non-Polymers* | Number of molecules | 33 |
Total formula weight | 7299.9 | |
All* | Total formula weight | 729734.7 |