8ZHI
SARS-CoV-2 spike trimer (6P) in complex with three H18 Fabs
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein,Fibritin,Expression Tag | polymer | 1278 | 141253.9 | 3 | UniProt (P0DTC2) UniProt (A0A346FJN8) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein,Phage neck whiskers protein |
| 2 | D, F, H (D, F, K) | Light chain of H18 Fab | polymer | 243 | 25768.5 | 3 | Homo sapiens (human) | ||
| 3 | E, G, I (E, J, M) | Heavy chain of H18 Fab | polymer | 243 | 25868.3 | 3 | Homo sapiens (human) | ||
| 4 | J, K, L, M, N... (G, H, I, L, N...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
| 5 | AA, AB, BA, BB, CA... (A, C, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 33 | Chemie (NAG) |
Sequence modifications
A, B, C: 11 - 1208 (UniProt: P0DTC2)
A, B, C: 1211 - 1237 (UniProt: A0A346FJN8)
A, B, C: 1238 - 1288 (PDB: 8ZHI)
| PDB | External Database | Details |
|---|---|---|
| Gly 682 | Arg 682 | conflict |
| Ser 683 | Arg 683 | conflict |
| Ser 685 | Arg 685 | conflict |
| Pro 817 | Phe 817 | conflict |
| Pro 892 | Ala 892 | conflict |
| Pro 899 | Ala 899 | conflict |
| Pro 942 | Ala 942 | conflict |
| Pro 986 | Lys 986 | variant |
| Pro 987 | Val 987 | variant |
| Gly 1209 | - | linker |
| Ser 1210 | - | linker |
A, B, C: 1238 - 1288 (PDB: 8ZHI)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 9 |
| Total formula weight | 578672.0 | |
| Branched | Number of molecules | 12 |
| Total formula weight | 5092.8 | |
| Non-Polymers* | Number of molecules | 33 |
| Total formula weight | 7299.9 | |
| All* | Total formula weight | 591064.7 |
