8ZEE
Cryo-EM structure of an intermediate-state PSII-PRF2' complex during the process of photosystem II repair
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (B) | Photosystem II CP47 reaction center protein | polymer | 508 | 56089.7 | 1 | UniProt (A0A218N8S0) Pfam (PF00421) UniProt (by SIFTS) (P37255) | Chlamydomonas reinhardtii | PSII 47 kDa protein,Protein CP-47 |
| 2 | B (D) | Photosystem II D2 protein | polymer | 352 | 39474.0 | 1 | UniProt (P06007) Pfam (PF00124) | Chlamydomonas reinhardtii | PSII D2 protein,Photosystem Q(A) protein |
| 3 | C (E) | Cytochrome b559 subunit alpha | polymer | 82 | 9312.6 | 1 | UniProt (P48268) Pfam (PF00283) Pfam (PF00284) | Chlamydomonas reinhardtii | PSII reaction center subunit V |
| 4 | D (F) | Cytochrome b559 subunit beta | polymer | 44 | 4986.0 | 1 | UniProt (Q08363) Pfam (PF00283) | Chlamydomonas reinhardtii | PSII reaction center subunit VI |
| 5 | E (H) | Photosystem II reaction center protein H | polymer | 88 | 9445.1 | 1 | UniProt (P22666) Pfam (PF00737) | Chlamydomonas reinhardtii | PSII-H,Photosystem II 8 kDa phosphoprotein |
| 6 | F (I) | Photosystem II reaction center protein I | polymer | 37 | 4245.0 | 1 | UniProt (P59763) Pfam (PF02532) | Chlamydomonas reinhardtii | PSII-I,PSII 4.8 kDa protein |
| 7 | G (K) | Photosystem II reaction center protein K | polymer | 46 | 5062.1 | 1 | UniProt (P18263) Pfam (PF02533) | Chlamydomonas reinhardtii | PSII-K |
| 8 | H (L) | Photosystem II reaction center protein L | polymer | 38 | 4431.2 | 1 | UniProt (P32974) Pfam (PF02419) | Chlamydomonas reinhardtii | PSII-L |
| 9 | I (M) | Photosystem II reaction center protein M | polymer | 34 | 3762.4 | 1 | UniProt (P92277) Pfam (PF05151) | Chlamydomonas reinhardtii | PSII-M |
| 10 | J (T) | Photosystem II reaction center protein T | polymer | 31 | 3639.4 | 1 | UniProt (P37256) Pfam (PF01405) | Chlamydomonas reinhardtii | PSII-T |
| 11 | K (V) | Photosystem II reaction center protein Psb30 | polymer | 33 | 3333.1 | 1 | UniProt (P50370) Pfam (PF05969) | Chlamydomonas reinhardtii | Photosystem II reaction center protein Ycf12 |
| 12 | L (X) | 4.1 kDa photosystem II subunit | polymer | 101 | 9894.7 | 1 | UniProt (A8I846) Pfam (PF06596) | Chlamydomonas reinhardtii | |
| 13 | M (Z) | Photosystem II reaction center protein Z | polymer | 62 | 6565.9 | 1 | UniProt (P92276) Pfam (PF01737) | Chlamydomonas reinhardtii | PSII-Z |
| 14 | N (C) | Photosystem II CP43 reaction center protein | polymer | 461 | 50680.7 | 1 | UniProt (P10898) Pfam (PF00421) | Chlamydomonas reinhardtii | PSII 43 kDa protein,Protein CP-43,Protein P6 |
| 15 | O (A) | Photosystem II protein D1 | polymer | 329 | 36515.6 | 1 | UniProt (P07753) Pfam (PF00124) | Chlamydomonas reinhardtii | PSII D1 protein,32 kDa thylakoid membrane protein,Photosystem II Q(B) protein |
| 16 | P (1) | Chains: 1 | polymer | 99 | 10153.9 | 1 | UniProt (A8HMM7) | Chlamydomonas reinhardtii | |
| 17 | AA, BA, CA, DA, EA... (B, A, C, D) | CHLOROPHYLL A | non-polymer | 893.5 | 35 | Chemie (CLA) | |||
| 18 | AB, CB, GA, HA, HB... (H, K, B, Z, A...) | BETA-CAROTENE | non-polymer | 536.9 | 10 | Chemie (BCR) PubChem (21672398) PubChem (46783370) PubChem (46846294) PubChem (176490061) PubChem (177696266) PubChem (54603957) PubChem (54612003) PubChem (5280489) PubChem (92863345) PubChem (124919640) PubChem (573) PubChem (86765360) PubChem (91827292) PubChem (146673260) PubChem (152743364) PubChem (160505766) PubChem (92863346) PubChem (92863347) PubChem (92863348) PubChem (100990628) PubChem (101525094) PubChem (101525095) PubChem (5315709) PubChem (5353436) PubChem (5356616) PubChem (124919639) PubChem (5927371) PubChem (6477957) PubChem (129651951) PubChem (132274419) PubChem (9828626) PubChem (10256668) PubChem (12305639) PubChem (12305640) PubChem (12305642) PubChem (12305644) PubChem (12305647) PubChem (12305652) PubChem (145925599) PubChem (159562859) PubChem (172654026) PubChem (172878405) PubChem (173398668) | |||
| 19 | BB, CC, DB, IB, JA... (H, C, K, B, D) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 6 | Chemie (LMG) | |||
| 20 | EB, FB, KA, LA, MA... (K, L, B, D) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 8 | Chemie (LHG) PubChem (46936292) PubChem (65144) PubChem (73416066) PubChem (13305396) PubChem (446440) PubChem (9547104) PubChem (11846227) PubChem (138986743) | |||
| 21 | NA (D) | BICARBONATE ION | non-polymer | 61.0 | 1 | Chemie (BCT) PubChem (769) | |||
| 22 | RA (D) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 1 | Chemie (PL9) PubChem (23304240) PubChem (21881166) PubChem (20286) PubChem (5375177) PubChem (6323474) PubChem (6325820) PubChem (6433402) | |||
| 23 | XA, YA (D) | PHEOPHYTIN A | non-polymer | 871.2 | 2 | Chemie (PHO) | |||
| 24 | ZA (E) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 1 | Chemie (HEM) | |||
| 25 | GB (X) | RRR-ALPHA-TOCOPHERYLQUINONE | non-polymer | 446.7 | 1 | Chemie (VTQ) PubChem (46183939) PubChem (46183940) PubChem (46183941) PubChem (46183942) PubChem (2734086) PubChem (118322878) PubChem (24205) PubChem (15561182) PubChem (15561186) PubChem (118322880) PubChem (137445245) PubChem (138752598) PubChem (15561183) PubChem (15561184) PubChem (15561185) | |||
| 26 | AC, YB, ZB (C) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 3 | Chemie (DGD) PubChem (24865462) PubChem (50904896) PubChem (24865463) PubChem (46936671) PubChem (53480668) PubChem (447899) PubChem (4629344) PubChem (15991538) PubChem (154573294) PubChem (448441) PubChem (171123158) PubChem (134746152) PubChem (140529801) | |||
| 27 | BC (C) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 1 | Chemie (SQD) PubChem (25147486) PubChem (25235342) PubChem (42607399) PubChem (159321) PubChem (481096) PubChem (134765349) PubChem (102201395) PubChem (5459390) PubChem (9810997) PubChem (9918745) PubChem (10219110) PubChem (10373133) PubChem (14463145) | |||
| 28 | DC (A) | FE (II) ION | non-polymer | 55.8 | 1 | Chemie (FE2) PubChem (27284) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 16 |
| Total formula weight | 257591.5 | |
| Non-Polymers* | Number of molecules | 70 |
| Total formula weight | 54462.2 | |
| All* | Total formula weight | 312053.7 |
