8ZE6
Crystal structure of MjHKU4r-CoV-1 RBD bound to MjDPP4
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (B, D) | Dipeptidyl peptidase 4 | polymer | 728 | 84407.5 | 2 | Pfam (PF00930) Pfam (PF00326) UniProt (by SIFTS) (P27487) | Manis javanica | |
| 2 | B, D (C, A) | Spike glycoprotein | polymer | 203 | 22504.4 | 2 | UniProt (A0AAE8ZFM2) | Pangolin coronavirus HKU4 | S glycoprotein,E2,Peplomer protein |
| 3 | E, F, G, H, I... (E, F, G, H, I...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 6 | In PDB GlyTouCan (G42666HT) | |||
| 4 | K, L, N, O, P (B, D) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 5 | Chemie (NAG) | |||
| 5 | M (B) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 6 | Q, R, S, T (B, C, D, A) | water | water | 18.0 | 157 | Chemie (HOH) |
Sequence modifications
C, A: 388 - 590 (UniProt: A0AAE8ZFM2)
| PDB | External Database | Details |
|---|---|---|
| Asp 388 | Ser 388 | conflict |
| Ala 482 | Ser 482 | conflict |
| Glu 544 | Val 544 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 213823.9 | |
| Branched | Number of molecules | 6 |
| Total formula weight | 2546.4 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 1198.1 | |
| All* | Total formula weight | 217568.4 |
