8ZDW
The cryoEM structure of H5N1 HA split from symmetric filament in conformation A
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, K, L (A, C, H) | Hemagglutinin | polymer | 337 | 38080.4 | 3 | UniProt (Q6DQ33) Pfam (PF00509) | Influenza A virus (strain A/Vietnam/1203/2004 H5N1) | |
| 2 | B, E, F (B, D, I) | Hemagglutinin | polymer | 228 | 26147.4 | 3 | UniProt (Q6DQ33) Pfam (PF00509) | Influenza A virus (strain A/Vietnam/1203/2004 H5N1) | |
| 3 | C, I, J (R, E, J) | H5M9 Fab, light chain | polymer | 217 | 23946.3 | 3 | Mus musculus (house mouse) | ||
| 4 | D, G, H (U, F, L) | Anti-H5N1 hemagglutinin monoclonal anitbody H5M9 heavy chain | polymer | 222 | 23935.8 | 3 | UniProt (U5LP42) Pfam (PF07686) Pfam (PF07654) | Mus musculus (house mouse) | |
| 5 | M, P, S (G, N, Q) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
| 6 | N, O, Q, R, T... (K, M, O, P, S...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 6 | In PDB GlyTouCan (G15407YE) | |||
| 7 | V, W, X (V, W, X) | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 674.6 | 3 | In PDB GlyTouCan (G00065MO) | |||
| 8 | AA, BA, CA, DA, EA... (B, R, D, I, E...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 12 | Chemie (NAG) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 336329.7 | |
| Branched | Number of molecules | 12 |
| Total formula weight | 6816.3 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 2654.5 | |
| All* | Total formula weight | 345800.4 |
