8ZDC
Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (2) | 18S rRNA | polymer | 1873 | 604100.8 | 1 | Homo sapiens (human) | ||
| 2 | B (R) | Small ribosomal subunit protein eS17 | polymer | 135 | 15578.2 | 1 | UniProt (P08708) Pfam (PF00833) | Homo sapiens (human) | 40S ribosomal protein S17 |
| 3 | C (A) | Small ribosomal subunit protein uS2 | polymer | 295 | 32883.9 | 1 | UniProt (P08865) Pfam (PF00318) Pfam (PF16122) | Homo sapiens (human) | 37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,40S ribosomal protein SA,67 kDa laminin receptor,67LR,Colon carcinoma laminin-binding protein,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40,Multidrug resistance-associated protein MGr1-Ag,NEM/1CHD4 |
| 4 | D (B) | Small ribosomal subunit protein eS1 | polymer | 264 | 30002.1 | 1 | UniProt (P61247) Pfam (PF01015) | Homo sapiens (human) | 40S ribosomal protein S3a,v-fos transformation effector protein,Fte-1 |
| 5 | E (C) | Small ribosomal subunit protein uS5 | polymer | 293 | 31376.5 | 1 | UniProt (P15880) Pfam (PF00333) Pfam (PF03719) | Homo sapiens (human) | 40S ribosomal protein S2,40S ribosomal protein S4,Protein LLRep3 |
| 6 | F (E) | Small ribosomal subunit protein eS4, X isoform | polymer | 263 | 29654.9 | 1 | UniProt (P62701) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) Pfam (PF08071) | Homo sapiens (human) | 40S ribosomal protein S4,SCR10,Single copy abundant mRNA protein |
| 7 | G (G) | Small ribosomal subunit protein eS6 | polymer | 249 | 28751.9 | 1 | UniProt (P62753) Pfam (PF01092) | Homo sapiens (human) | 40S ribosomal protein S6,Phosphoprotein NP33 |
| 8 | H (H) | Small ribosomal subunit protein eS7 | polymer | 194 | 22168.9 | 1 | UniProt (P62081) Pfam (PF01251) | Homo sapiens (human) | 40S ribosomal protein S7 |
| 9 | I (I) | Small ribosomal subunit protein eS8 | polymer | 208 | 24263.4 | 1 | UniProt (P62241) Pfam (PF01201) | Homo sapiens (human) | 40S ribosomal protein S8 |
| 10 | J (J) | Small ribosomal subunit protein uS4 | polymer | 194 | 22641.6 | 1 | UniProt (P46781) Pfam (PF00163) Pfam (PF01479) | Homo sapiens (human) | 40S ribosomal protein S9 |
| 11 | K (L) | Small ribosomal subunit protein uS17 | polymer | 158 | 18468.8 | 1 | UniProt (P62280) Pfam (PF16205) Pfam (PF00366) | Homo sapiens (human) | 40S ribosomal protein S11 |
| 12 | L (N) | Small ribosomal subunit protein uS15 | polymer | 151 | 17259.4 | 1 | UniProt (P62277) Pfam (PF08069) Pfam (PF00312) | Homo sapiens (human) | 40S ribosomal protein S13 |
| 13 | M (O) | Small ribosomal subunit protein uS11 | polymer | 151 | 16302.8 | 1 | UniProt (P62263) Pfam (PF00411) | Homo sapiens (human) | 40S ribosomal protein S14 |
| 14 | N (V) | Small ribosomal subunit protein eS21 | polymer | 83 | 9124.4 | 1 | UniProt (P63220) Pfam (PF01249) | Homo sapiens (human) | 40S ribosomal protein S21 |
| 15 | O (W) | Small ribosomal subunit protein uS8 | polymer | 130 | 14865.6 | 1 | UniProt (P62244) Pfam (PF00410) | Homo sapiens (human) | 40S ribosomal protein S15a |
| 16 | P (X) | Small ribosomal subunit protein uS12 | polymer | 143 | 15844.7 | 1 | UniProt (P62266) Pfam (PF00164) | Homo sapiens (human) | 40S ribosomal protein S23 |
| 17 | Q (Y) | Small ribosomal subunit protein eS24 | polymer | 133 | 15463.3 | 1 | UniProt (P62847) Pfam (PF01282) | Homo sapiens (human) | 40S ribosomal protein S24 |
| 18 | R (b) | Small ribosomal subunit protein eS27 | polymer | 84 | 9480.2 | 1 | UniProt (P42677) Pfam (PF01667) | Homo sapiens (human) | 40S ribosomal protein S27,Metallopan-stimulin 1,MPS-1 |
| 19 | S (x) | RNA-binding protein PNO1 | polymer | 252 | 27970.4 | 1 | UniProt (Q9NRX1) Pfam (PF22891) | Homo sapiens (human) | Partner of NOB1 |
| 20 | T (y) | RNA-binding protein NOB1 | polymer | 412 | 46743.9 | 1 | UniProt (Q9ULX3) Pfam (PF17146) Pfam (PF15017) Pfam (PF08772) | Homo sapiens (human) | Phosphorylation regulatory protein HP-10,Protein ART-4 |
| 21 | U (u) | Pre-rRNA-processing protein TSR1 homolog | polymer | 804 | 91951.2 | 1 | UniProt (Q2NL82) Pfam (PF22298) Pfam (PF08142) Pfam (PF04950) | Homo sapiens (human) | |
| 22 | V (t) | Protein LTV1 homolog | polymer | 475 | 54935.9 | 1 | UniProt (Q96GA3) Pfam (PF04180) | Homo sapiens (human) | |
| 23 | W (d) | Small ribosomal subunit protein uS14 | polymer | 56 | 6690.8 | 1 | UniProt (P62273) Pfam (PF00253) | Homo sapiens (human) | 40S ribosomal protein S29 |
| 24 | X (D) | Small ribosomal subunit protein uS3 | polymer | 243 | 26729.4 | 1 | UniProt (P23396) Pfam (PF07650) Pfam (PF00189) | Homo sapiens (human) | 40S ribosomal protein S3 |
| 25 | Y (F) | Small ribosomal subunit protein uS7 | polymer | 204 | 22913.5 | 1 | UniProt (P46782) Pfam (PF00177) | Homo sapiens (human) | 40S ribosomal protein S5 |
| 26 | Z (K) | Small ribosomal subunit protein eS10 | polymer | 165 | 18933.8 | 1 | UniProt (P46783) Pfam (PF03501) | Homo sapiens (human) | 40S ribosomal protein S10 |
| 27 | AA (M) | Small ribosomal subunit protein eS12 | polymer | 132 | 14539.0 | 1 | UniProt (P25398) Pfam (PF01248) | Homo sapiens (human) | 40S ribosomal protein S12 |
| 28 | BA (P) | Small ribosomal subunit protein uS19 | polymer | 145 | 17076.2 | 1 | UniProt (P62841) Pfam (PF00203) | Homo sapiens (human) | 40S ribosomal protein S15,RIG protein |
| 29 | CA (Q) | Small ribosomal subunit protein uS9 | polymer | 146 | 16477.4 | 1 | UniProt (P62249) Pfam (PF00380) | Homo sapiens (human) | 40S ribosomal protein S16 |
| 30 | DA (S) | Small ribosomal subunit protein uS13 | polymer | 152 | 17759.8 | 1 | UniProt (P62269) Pfam (PF00416) | Homo sapiens (human) | 40S ribosomal protein S18,Ke-3,Ke3 |
| 31 | EA (T) | Small ribosomal subunit protein eS19 | polymer | 145 | 16091.6 | 1 | UniProt (P39019) Pfam (PF01090) | Homo sapiens (human) | 40S ribosomal protein S19 |
| 32 | FA (U) | Small ribosomal subunit protein uS10 | polymer | 119 | 13398.8 | 1 | UniProt (P60866) Pfam (PF00338) | Homo sapiens (human) | 40S ribosomal protein S20 |
| 33 | GA (Z) | Small ribosomal subunit protein eS25 | polymer | 125 | 13776.2 | 1 | UniProt (P62851) Pfam (PF03297) | Homo sapiens (human) | 40S ribosomal protein S25 |
| 34 | HA (c) | Small ribosomal subunit protein eS28 | polymer | 69 | 7855.1 | 1 | UniProt (P62857) Pfam (PF01200) | Homo sapiens (human) | 40S ribosomal protein S28 |
| 35 | IA (g) | Small ribosomal subunit protein RACK1 | polymer | 317 | 35115.7 | 1 | UniProt (P63244) Pfam (PF00400) | Homo sapiens (human) | Cell proliferation-inducing gene 21 protein,Guanine nucleotide-binding protein subunit beta-2-like 1,Guanine nucleotide-binding protein subunit beta-like protein 12.3,Human lung cancer oncogene 7 protein,HLC-7,Receptor for activated C kinase,Receptor of activated protein C kinase 1 |
| 36 | JA (p) | Serine/threonine-protein kinase RIO3 | polymer | 519 | 59178.9 | 1 | UniProt (O14730) Pfam (PF01163) | Homo sapiens (human) | RIO kinase 3,sudD homolog |
| 37 | KA, LA (i, j) | Ubiquitin | polymer | 76 | 8576.8 | 2 | UniProt (P62979) Pfam (PF00240) UniProt (by SIFTS) (P0CG48) | Homo sapiens (human) | |
| 38 | MA, NA (y, d) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 38 |
| Total formula weight | 1483522.2 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 130.8 | |
| All* | Total formula weight | 1483653.0 |
