8Z9L
Crystal structure of SARS-CoV-2 RBD bound to Rhinolophus affinis ACE2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E, G (B, I, O, U) | Angiotensin-converting enzyme | polymer | 598 | 69607.3 | 4 | UniProt (A0A7D7JS29) UniProt (by SIFTS) (A0A7D7J6S6) | Rhinolophus affinis (intermediate horseshoe bat) | |
| 2 | B, D, F, H (F, L, R, X) | Spike protein S1 | polymer | 197 | 22108.8 | 4 | UniProt (P0DTC2) Pfam (PF09408) | Severe acute respiratory syndrome coronavirus 2 | |
| 3 | I, J (A, C) | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 2 | In PDB GlyTouCan (G86851RC) | |||
| 4 | K, L, M, N, O... (B, I, L, O, R...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 10 | Chemie (NAG) |
Sequence modifications
B, I, O, U: 19 - 615 (UniProt: A0A7D7JS29)
F, L, R, X: 333 - 527 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Pro 18 | - | expression tag |
| His 34 | Arg 34 | conflict |
| Asp 38 | Glu 38 | conflict |
| Ala 185 | Val 185 | conflict |
| Gln 300 | His 300 | conflict |
| Lys 598 | Gln 598 | conflict |
| Ala 614 | Ser 614 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Pro 332 | - | expression tag |
| His 528 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 366864.4 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 734.7 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 2212.1 | |
| All* | Total formula weight | 369811.2 |






