8Z2E
Crystal structure of nanobody Tnb04-1 with antibody 1F11 fab and SARS-CoV-2 RBD
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (B) | Tnb04-1 | polymer | 116 | 12659.2 | 1 | Vicugna pacos | ||
| 2 | B (E) | Spike protein S1 | polymer | 217 | 24600.6 | 1 | UniProt (P0DTC2) Pfam (PF09408) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | |
| 3 | C (H) | 1F11-H | polymer | 217 | 22851.6 | 1 | Homo sapiens (human) | ||
| 4 | D (L) | 1F11-L | polymer | 214 | 23274.8 | 1 | Homo sapiens (human) | ||
| 5 | E (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 6 | F, G, H, I (B, E, H, L) | water | water | 18.0 | 300 | Chemie (HOH) |
Sequence modifications
E: 319 - 529 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| His 530 | - | expression tag |
| His 531 | - | expression tag |
| His 532 | - | expression tag |
| His 533 | - | expression tag |
| His 534 | - | expression tag |
| His 535 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 83386.2 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 424.4 | |
| All* | Total formula weight | 83810.6 |
