8Z06
The structure of HLA-A*2402 complex with peptide from SARS-CoV-2 S448-456 NYDYWYRSF(JN.1)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | MHC class I antigen | polymer | 274 | 31551.9 | 1 | UniProt (A0A143Y4R2) Pfam (PF00129) Pfam (PF07654) | Homo sapiens (human) | HLA class I heavy chain |
| 2 | B (B) | Beta-2-microglobulin | polymer | 99 | 11748.2 | 1 | UniProt (P61769) Pfam (PF07654) | Homo sapiens (human) | |
| 3 | C (E) | Spike protein S2' | polymer | 9 | 1314.4 | 1 | UniProt (P0DTC2) | Severe acute respiratory syndrome coronavirus 2 | ASN-TYR-ASP-TYR-TRP-TYR-ARG-SER-PHE |
| 4 | D, E, F (A, B, E) | water | water | 18.0 | 118 | Chemie (HOH) |
Sequence modifications
E: 1 - 9 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Asp 3 | Asn 450 | conflict |
| Trp 5 | Leu 452 | conflict |
| Ser 8 | Leu 455 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 44614.4 | |
| All* | Total formula weight | 44614.4 |
