8YZW
The structure of HLA-A*2402 complex with peptide from SARS-CoV-2 S448-456 NYDYWYRLF(BA.2.86)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D (D, A) | MHC class I antigen | polymer | 274 | 31551.9 | 2 | UniProt (A0A143Y4R2) | Homo sapiens (human) | HLA class I heavy chain |
| 2 | B, E (E, B) | Beta-2-microglobulin | polymer | 100 | 11879.4 | 2 | UniProt (P61769) Pfam (PF07654) | Homo sapiens (human) | |
| 3 | C, F (F, C) | Spike protein S2' | polymer | 9 | 1340.5 | 2 | UniProt (P0DTC2) | Severe acute respiratory syndrome coronavirus 2 | ASN-TYR-ASP-TYR-TRP-TYR-ARG-LEU-PHE |
| 4 | G, H, I, J, K... (D, E, F, A, B...) | water | water | 18.0 | 230 | Chemie (HOH) |
Sequence modifications
E, B: 1 - 99 (UniProt: P61769)
F, C: 1 - 9 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
| PDB | External Database | Details |
|---|---|---|
| Asp 3 | Asn 450 | conflict |
| Trp 5 | Leu 452 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 89543.4 | |
| All* | Total formula weight | 89543.4 |
