8YVR
Crystal structure of GH65 alpha-1,2-glucosidase from Flavobacterium johnsoniae in complex with 1-deoxynojirimycin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Candidate alpha glycoside phosphorylase Glycoside hydrolase family 65 | polymer | 678 | 76489.2 | 3 | UniProt (A5FBJ5) | Flavobacterium johnsoniae UW101 | alpha-1,2-glucosidase |
| 2 | D, F, G (A, B, C) | 1-DEOXYNOJIRIMYCIN | non-polymer | 163.2 | 3 | Chemie (NOJ) PubChem (44387838) PubChem (46780624) PubChem (46783361) PubChem (176077) PubChem (13018786) PubChem (58195791) PubChem (58241649) PubChem (58622819) PubChem (173365510) PubChem (173729950) PubChem (59892309) PubChem (59928089) PubChem (68012331) PubChem (68197421) PubChem (68197422) PubChem (68226300) PubChem (70254323) PubChem (89057096) PubChem (89288875) PubChem (90298233) PubChem (90298234) PubChem (117948891) PubChem (118458168) PubChem (1374) PubChem (29435) PubChem (72258) PubChem (452001) PubChem (5387598) PubChem (6603829) PubChem (6604844) PubChem (10329607) PubChem (10352016) PubChem (10702150) PubChem (10888248) PubChem (11094965) PubChem (11105683) PubChem (11240664) PubChem (11957613) PubChem (13018788) PubChem (130756880) PubChem (131019201) PubChem (132769969) PubChem (133673282) PubChem (134694855) PubChem (159481540) PubChem (168093369) PubChem (173809871) PubChem (174403809) PubChem (175474820) | |||
| 3 | E, H (A, C) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 2 | Chemie (EDO) | |||
| 4 | I, J, K (A, B, C) | water | water | 18.0 | 886 | Chemie (HOH) |
Sequence modifications
A, B, C: 24 - 681 (UniProt: A5FBJ5)
| PDB | External Database | Details |
|---|---|---|
| Met 4 | - | initiating methionine |
| Gly 5 | - | expression tag |
| Ser 6 | - | expression tag |
| Ser 7 | - | expression tag |
| His 8 | - | expression tag |
| His 9 | - | expression tag |
| His 10 | - | expression tag |
| His 11 | - | expression tag |
| His 12 | - | expression tag |
| His 13 | - | expression tag |
| Ser 14 | - | expression tag |
| Ser 15 | - | expression tag |
| Gly 16 | - | expression tag |
| Leu 17 | - | expression tag |
| Val 18 | - | expression tag |
| Pro 19 | - | expression tag |
| Arg 20 | - | expression tag |
| Gly 21 | - | expression tag |
| Ser 22 | - | expression tag |
| His 23 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 229467.7 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 613.7 | |
| All* | Total formula weight | 230081.3 |
