8YUB

Crystal structure of SARS-CoV-2 ConSp RBD in complex with neutralizing antibody CC25.4 Fab

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, D (A, D)	Neutralizing antibody CC25.4 heavy chain	polymer	228	25011.0	2		Homo sapiens
2	B, E (B, E)	Neutralizing antibody CC25.4 light chain	polymer	217	22815.1	2		Homo sapiens
3	C, F (C, F)	Spike protein S2'	polymer	197	22185.0	2	UniProt (P0DTC2) Pfam (PF09408)	Severe acute respiratory syndrome coronavirus 2
4	G, H (G, H)	alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		367.3	2	In PDB GlyTouCan (G86851RC)
5	I, J (B, E)	1,2-ETHANEDIOL	non-polymer		62.1	2	Chemie (EDO)
6	K, L, M, N, O... (A, B, C, D, E...)	water	water		18.0	302	Chemie (HOH)

Sequence modifications

C, F: 333 - 529 (UniProt: P0DTC2)

PDB	External Database	Details
His 339	Gly 339	variant
Thr 346	Arg 346	variant
Ile 368	Leu 368	variant
Phe 371	Ser 371	variant
Pro 373	Ser 373	variant
Phe 375	Ser 375	variant
Ala 376	Thr 376	variant
Asn 405	Asp 405	variant
Ser 408	Arg 408	variant
Asn 417	Lys 417	variant
Lys 440	Asn 440	variant
Thr 444	Lys 444	variant
Pro 445	Val 445	variant
Ser 446	Gly 446	variant
Arg 452	Leu 452	variant
Lys 460	Asn 460	variant
Asn 477	Ser 477	variant
Lys 478	Thr 478	variant
Ala 484	Glu 484	variant
Pro 486	Phe 486	variant
Ser 490	Phe 490	variant
Arg 498	Gln 498	variant
Tyr 501	Asn 501	variant
His 505	Tyr 505	variant

Contents of the asymmetric unit

Polymers	Number of chains	6
	Total formula weight	140022.2
Branched	Number of molecules	2
	Total formula weight	734.7
Non-Polymers*	Number of molecules	2
	Total formula weight	124.1
All*	Total formula weight	140881.1

*Water molecules are not included.