8YS2
Overall structure of Eastern Equine Encephalitis virus VLP in complex with the receptor VLDLR LA1-2
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, D, G, J | Spike glycoprotein E1 | polymer | 441 | 47984.2 | 4 | UniProt (Q4QXJ7) Pfam (PF01589) In PDB | Eastern equine encephalitis virus | E1 envelope glycoprotein |
2 | B, E, H, K | Spike glycoprotein E2 | polymer | 420 | 47047.0 | 4 | UniProt (Q4QXJ7) Pfam (PF00943) In PDB | Eastern equine encephalitis virus | E2 envelope glycoprotein |
3 | C, F, I, L | Capsid protein | polymer | 261 | 29178.8 | 4 | UniProt (Q4QXJ7) Pfam (PF00944) In PDB | Eastern equine encephalitis virus | Coat protein,C |
4 | M, N, O, P | Very low-density lipoprotein receptor | polymer | 80 | 8854.7 | 4 | UniProt (P98155) Pfam (PF00057) In PDB | Homo sapiens (human) | VLDL receptor,VLDL-R |
5 | M, N, O, P | CALCIUM ION | non-polymer | 40.1 | 8 | Chemie (CA) |
Sequence modifications
A, D, G, J: 1 - 441 (UniProt: Q4QXJ7)
B, E, H, K: 1 - 420 (UniProt: Q4QXJ7)
C, F, I, L: 1 - 261 (UniProt: Q4QXJ7)
PDB | External Database | Details |
---|---|---|
Ser 82 | Thr 883 | conflict |
Val 237 | Ala 1038 | conflict |
Lys 246 | Arg 1047 | conflict |
Phe 311 | Ser 1112 | conflict |
Ile 411 | Leu 1212 | conflict |
PDB | External Database | Details |
---|---|---|
Lys 206 | Glu 530 | conflict |
PDB | External Database | Details |
---|---|---|
Ser 50 | Asn 50 | conflict |
Asn 67 | Lys 67 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 16 |
Total formula weight | 532259.2 | |
Non-Polymers* | Number of molecules | 8 |
Total formula weight | 320.6 | |
All* | Total formula weight | 532579.8 |