8YGS
Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Outer capsid protein VP4 | polymer | 581 | 64861.4 | 2 | UniProt (A0A5J6BC68) Pfam (PF00426) Pfam (PF17477) Pfam (PF17478) UniProt (by SIFTS) (A2T3T2) | Rotavirus A | |
| 2 | C (C) | Outer capsid protein VP4 | polymer | 581 | 64891.5 | 1 | UniProt (A0A5J6BC68) Pfam (PF00426) Pfam (PF17477) Pfam (PF17478) UniProt (by SIFTS) (A2T3T2) | Rotavirus A | |
| 3 | D, F (H, M) | Antibody 7H13 heavy chain | polymer | 116 | 12766.3 | 2 | Mus musculus | ||
| 4 | E, G (L, N) | Antibody 7H13 light chain | polymer | 107 | 11640.9 | 2 | Mus musculus |
Sequence modifications
A, B: -2 - 578 (UniProt: A0A5J6BC68)
C: -2 - 578 (UniProt: A0A5J6BC68)
| PDB | External Database | Details |
|---|---|---|
| Ser 332 | Tyr 335 | conflict |
| Ser 445 | Asp 448 | conflict |
| Asn 454 | Asp 457 | conflict |
| His 478 | Asp 481 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 144 | Val 147 | conflict |
| Glu 153 | Gly 156 | conflict |
| Lys 172 | Glu 175 | conflict |
| Gly 187 | Ala 190 | conflict |
| Ser 332 | Tyr 335 | conflict |
| Ser 445 | Asp 448 | conflict |
| Asn 454 | Asp 457 | conflict |
| His 478 | Asp 481 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 7 |
| Total formula weight | 243428.7 | |
| All* | Total formula weight | 243428.7 |
