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8Y8J

Local structure of HCoV-HKU1C spike in complex with glycan

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, BSpike glycoproteinpolymer1263140242.52UniProt (Q0ZME7)
Pfam (PF16451)
Pfam (PF09408)
Pfam (PF19209)
Pfam (PF01601)
In PDB
Human coronavirus HKU1 (isolate N5)S glycoprotein,E2,Peplomer protein
2Cbeta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched586.51In PDB
GlyTouCan (G15407YE)
3D, E, F, G, H2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.45In PDB
GlyTouCan (G42666HT)
4Amethyl 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acidnon-polymer365.31Chemie (MJJ)
5A, B2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.24Chemie (NAG)
Sequence modifications
A, B: 14 - 1276 (UniProt: Q0ZME7)
PDBExternal DatabaseDetails
Gly 752Arg 752engineered mutation
Gly 753Arg 753engineered mutation
Ser 754Lys 754engineered mutation
Gly 755Arg 755engineered mutation
Ser 756Arg 756engineered mutation
Pro 902Leu 902engineered mutation
Pro 980Ser 980engineered mutation
Pro 1023Asn 1023engineered mutation
Pro 1067Asn 1067engineered mutation
Pro 1068Leu 1068engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight280484.9
BranchedNumber of molecules6
Total formula weight2708.5
Non-Polymers*Number of molecules5
Total formula weight1250.2
All*Total formula weight284443.6
*Water molecules are not included.

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PDB entries from 2024-10-16

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