8Y8J
Local structure of HCoV-HKU1C spike in complex with glycan
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Spike glycoprotein | polymer | 1263 | 140242.5 | 2 | UniProt (Q0ZME7) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Human coronavirus HKU1 (isolate N5) | S glycoprotein,E2,Peplomer protein |
2 | C | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
3 | D, E, F, G, H | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 5 | In PDB GlyTouCan (G42666HT) | |||
4 | A | methyl 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid | non-polymer | 365.3 | 1 | Chemie (MJJ) | |||
5 | A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 4 | Chemie (NAG) |
Sequence modifications
A, B: 14 - 1276 (UniProt: Q0ZME7)
PDB | External Database | Details |
---|---|---|
Gly 752 | Arg 752 | engineered mutation |
Gly 753 | Arg 753 | engineered mutation |
Ser 754 | Lys 754 | engineered mutation |
Gly 755 | Arg 755 | engineered mutation |
Ser 756 | Arg 756 | engineered mutation |
Pro 902 | Leu 902 | engineered mutation |
Pro 980 | Ser 980 | engineered mutation |
Pro 1023 | Asn 1023 | engineered mutation |
Pro 1067 | Asn 1067 | engineered mutation |
Pro 1068 | Leu 1068 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 280484.9 | |
Branched | Number of molecules | 6 |
Total formula weight | 2708.5 | |
Non-Polymers* | Number of molecules | 5 |
Total formula weight | 1250.2 | |
All* | Total formula weight | 284443.6 |