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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8Y5T

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 3) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)		50S ribosomal protein L31polymer707887.11UniProt (P0A7M9)
Pfam (PF01197)		Escherichia coli K-12Large ribosomal subunit protein bL31-A
2B
(B)		50S ribosomal protein L32polymer576463.41UniProt (P0A7N4)
Pfam (PF01783)		Escherichia coli K-12Large ribosomal subunit protein bL32
3C
(C)		50S ribosomal protein L33polymer556388.61UniProt (P0A7N9)
Pfam (PF00471)		Escherichia coli K-12Large ribosomal subunit protein bL33
4D
(D)		50S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)		Escherichia coli K-12Large ribosomal subunit protein bL34
5E
(E)		50S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)		Escherichia coli K-12Large ribosomal subunit protein bL35,Ribosomal protein A
6F
(F)		50S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)		Escherichia coli K-12Large ribosomal subunit protein bL36-A,Ribosomal protein B
7G
(G)		30S ribosomal protein S2polymer24126781.71UniProt (P0A7V0)
Pfam (PF00318)		Escherichia coli K-12Small ribosomal subunit protein uS2
8H
(H)		30S ribosomal protein S3polymer23326031.31UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)		Escherichia coli K-12Small ribosomal subunit protein uS3
9I
(I)		30S ribosomal protein S4polymer20623514.21UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)		Escherichia coli K-12Small ribosomal subunit protein uS4
10J
(J)		30S ribosomal protein S5polymer16717629.41UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)		Escherichia coli K-12Small ribosomal subunit protein uS5
11K
(K)		30S ribosomal protein S6, fully modified isoformpolymer13515727.51UniProt (P02358)
Pfam (PF01250)		Escherichia coli K-12
12L
(L)		30S ribosomal protein S7polymer17920055.21UniProt (P02359)
Pfam (PF00177)		Escherichia coli K-12Small ribosomal subunit protein uS7
13M
(M)		30S ribosomal protein S8polymer13014146.61UniProt (P0A7W7)
Pfam (PF00410)		Escherichia coli K-12Small ribosomal subunit protein uS8
14N
(N)		30S ribosomal protein S9polymer13014886.31UniProt (P0A7X3)
Pfam (PF00380)		Escherichia coli K-12Small ribosomal subunit protein uS9
15O
(O)		30S ribosomal protein S10polymer10311755.61UniProt (P0A7R5)
Pfam (PF00338)		Escherichia coli K-12Small ribosomal subunit protein uS10,Transcription termination/antitermination protein NusE
16P
(P)		30S ribosomal protein S11polymer12913871.01UniProt (P0A7R9)
Pfam (PF00411)		Escherichia coli K-12Small ribosomal subunit protein uS11
17Q
(Q)		30S ribosomal protein S12polymer12413768.21UniProt (P0A7S3)
Pfam (PF00164)		Escherichia coli K-12Small ribosomal subunit protein uS12
18R
(R)		30S ribosomal protein S13polymer11813128.51UniProt (P0A7S9)
Pfam (PF00416)		Escherichia coli K-12Small ribosomal subunit protein uS13
19S
(S)		30S ribosomal protein S14polymer10111606.61UniProt (P0AG59)
Pfam (PF00253)		Escherichia coli K-12Small ribosomal subunit protein uS14
20T
(T)		30S ribosomal protein S15polymer8910290.81UniProt (P0ADZ4)
Pfam (PF00312)		Escherichia coli K-12Small ribosomal subunit protein uS15
21U
(U)		30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)		Escherichia coli K-12Small ribosomal subunit protein bS16
22V
(V)		30S ribosomal protein S17polymer849724.51UniProt (P0AG63)
Pfam (PF00366)		Escherichia coli K-12Small ribosomal subunit protein uS17
23W
(W)		30S ribosomal protein S18polymer759005.51UniProt (P0A7T7)
Pfam (PF01084)		Escherichia coli K-12Small ribosomal subunit protein bS18
24X
(X)		30S ribosomal protein S19polymer9210455.41UniProt (P0A7U3)
Pfam (PF00203)		Escherichia coli K-12Small ribosomal subunit protein uS19
25Y
(Y)		30S ribosomal protein S20polymer879708.51UniProt (P0A7U7)
Pfam (PF01649)		Escherichia coli K-12Small ribosomal subunit protein bS20
26Z
(Z)		30S ribosomal protein S21polymer718524.01UniProt (P68679)
Pfam (PF01165)		Escherichia coli K-12Small ribosomal subunit protein bS21
27AA
(b)		50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)		Escherichia coli K-12Large ribosomal subunit protein uL2
28BA
(c)		50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)		Escherichia coli K-12Large ribosomal subunit protein uL3
29CA
(d)		50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)		Escherichia coli K-12Large ribosomal subunit protein uL4
30DA
(e)		50S ribosomal protein L5polymer17920333.61UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)		Escherichia coli K-12Large ribosomal subunit protein uL5
31EA
(f)		50S ribosomal protein L6polymer17718932.81UniProt (P0AG55)
Pfam (PF00347)		Escherichia coli K-12Large ribosomal subunit protein uL6
32FA
(g)		50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)		Escherichia coli K-12Large ribosomal subunit protein bL9
33GA
(i)		50S ribosomal protein L11polymer14214894.41UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)		Escherichia coli K-12Large ribosomal subunit protein uL11
34HA
(j)		50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)		Escherichia coli K-12Large ribosomal subunit protein uL13
35IA
(k)		50S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)		Escherichia coli K-12Large ribosomal subunit protein uL14
36JA
(l)		50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)		Escherichia coli K-12
37KA
(m)		50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)		Escherichia coli K-12Large ribosomal subunit protein uL16
38LA
(n)		50S ribosomal protein L17polymer12714393.71UniProt (P0AG44)
Pfam (PF01196)		Escherichia coli K-12Large ribosomal subunit protein bL17
39MA
(o)		50S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)		Escherichia coli K-12Large ribosomal subunit protein uL18
40NA
(p)		50S ribosomal protein L19polymer11513159.31UniProt (P0A7K6)
Pfam (PF01245)		Escherichia coli K-12Large ribosomal subunit protein bL19
41OA
(q)		50S ribosomal protein L20polymer11813528.01UniProt (P0A7L3)
Pfam (PF00453)		Escherichia coli K-12Large ribosomal subunit protein bL20
42PA
(r)		50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)		Escherichia coli K-12Large ribosomal subunit protein bL21
43QA
(s)		50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)		Escherichia coli K-12Large ribosomal subunit protein uL22
44RA
(t)		50S ribosomal protein L23polymer10011222.21UniProt (P0ADZ0)
Pfam (PF00276)		Escherichia coli K-12Large ribosomal subunit protein uL23
45SA
(u)		50S ribosomal protein L24polymer10411339.31UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)		Escherichia coli K-12Large ribosomal subunit protein uL24
46TA
(v)		50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)		Escherichia coli K-12Large ribosomal subunit protein bL25
47UA
(w)		50S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)		Escherichia coli K-12Large ribosomal subunit protein bL27
48VA
(x)		50S ribosomal protein L28polymer789027.61UniProt (P0A7M2)
Pfam (PF00830)		Escherichia coli K-12Large ribosomal subunit protein bL28
49WA
(y)		50S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)		Escherichia coli K-12Large ribosomal subunit protein uL29
50XA
(z)		50S ribosomal protein L30polymer596554.81UniProt (P0AG51)
Pfam (PF00327)		Escherichia coli K-12Large ribosomal subunit protein uL30
51YA
(1)		23S rRNApolymer2904941611.41GenBank (1929590828)Escherichia coli K-12
52ZA
(2)		5S rRNApolymer12038813.11GenBank (NR_103249)Escherichia coli K-12
53AB
(3)		16S rRNApolymer1542499690.01GenBank (1789840096)Escherichia coli K-12
54BB
(4)		mRNApolymer4413828.81synthetic construct
55CB
(8)		templete DNA strandpolymer3711230.21synthetic construct
56DB
(9)		non-templete DNA strandpolymer3711473.31synthetic construct
57EB, FB
(A1, A2)		DNA-directed RNA polymerase subunit alphapolymer32936558.72UniProt (P0A7Z4)
Pfam (PF01193)
Pfam (PF01000)
Pfam (PF03118)		Escherichia coli K-12RNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha
58GB
(B1)		DNA-directed RNA polymerase subunit beta'polymer1407155366.81UniProt (P0A8T7)
Pfam (PF04997)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)		Escherichia coli K-12RNAP subunit beta',RNA polymerase subunit beta',Transcriptase subunit beta'
59HB
(B2)		DNA-directed RNA polymerase subunit betapolymer1342150820.91UniProt (P0A8V2)
Pfam (PF04563)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF10385)
Pfam (PF00562)
Pfam (PF04560)		Escherichia coli K-12RNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta
60IB
(W0)		DNA-directed RNA polymerase subunit omegapolymer9110249.51UniProt (P0A800)
Pfam (PF01192)		Escherichia coli K-12RNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega
61JB
(NA)		Transcription termination/antitermination protein NusApolymer49554932.71UniProt (P0AFF6)
Pfam (PF08529)
Pfam (PF00575)
Pfam (PF13184)
Pfam (PF26594)
Pfam (PF14520)		Escherichia coli K-12N utilization substance protein A,Transcription termination/antitermination L factor
62KB
(NG)		Transcription termination/antitermination protein NusGpolymer18120560.51UniProt (P0AFG0)
Pfam (PF02357)
Pfam (PF00467)		Escherichia coli K-12
63LB
(5)		tRNA(Phe)polymer7624485.51GenBank (1845258627)Escherichia coli K-12
64MB
(6)		tRNA(fMet)polymer7724802.81GenBank (1845258627)Escherichia coli K-12
65NB
(0)		Elongation factor Gpolymer71679069.71UniProt (P0A6M8)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)		Escherichia coli K-12EF-G
66OB
(B1)		MAGNESIUM IONnon-polymer24.31Chemie (MG)
PubChem (888)
67PB
(0)		FUSIDIC ACIDnon-polymer516.71Chemie (FUA)
PubChem (3443)
PubChem (3032280)
PubChem (5820788)
PubChem (6604483)
PubChem (6914278)
PubChem (11466473)
PubChem (11973017)
PubChem (12110530)
PubChem (12305061)
PubChem (21148423)
PubChem (23636770)
PubChem (23637137)
PubChem (23639198)
PubChem (23639553)
PubChem (24867849)
PubChem (176519951)
PubChem (44655892)
PubChem (16757684)
PubChem (18530307)
PubChem (20639055)
PubChem (22800304)
PubChem (24871020)
PubChem (44345525)
PubChem (46781674)
PubChem (49868174)
PubChem (3032525)
PubChem (57373456)
PubChem (60138401)
PubChem (68099750)
PubChem (70684533)
PubChem (3000226)
PubChem (3001077)
PubChem (23423)
PubChem (244879)
PubChem (71315981)
PubChem (71317019)
PubChem (73952088)
PubChem (89877076)
PubChem (90660382)
PubChem (90697437)
PubChem (5280986)
PubChem (5288270)
PubChem (5353638)
PubChem (53911549)
PubChem (53911550)
PubChem (6604105)
PubChem (124291107)
PubChem (124900075)
PubChem (124900734)
PubChem (124900071)
PubChem (124900730)
PubChem (124921605)
PubChem (126963540)
PubChem (57312976)
PubChem (134694339)
PubChem (11957550)
PubChem (12305058)
PubChem (12305062)
PubChem (137703527)
PubChem (142165976)
PubChem (154790121)
PubChem (58872606)
PubChem (161670019)
PubChem (163002326)
PubChem (171153990)
PubChem (175673725)
PubChem (60138404)
PubChem (66593017)
PubChem (73759677)
PubChem (73952461)
PubChem (90660452)
PubChem (90660516)
PubChem (91122380)
PubChem (91450867)
PubChem (91873262)
PubChem (118855441)
PubChem (123332703)
PubChem (124291106)
PubChem (124833740)
PubChem (124833741)
PubChem (124867503)
PubChem (124900073)
PubChem (124900076)
PubChem (124900732)
PubChem (124900735)
PubChem (124921604)
PubChem (124932933)
PubChem (124932934)
PubChem (125032759)
PubChem (126968843)
PubChem (131707593)
PubChem (132342643)
PubChem (133688410)
PubChem (157247173)
PubChem (163002324)
PubChem (163002325)
PubChem (163002327)
PubChem (163002328)
PubChem (163002329)
PubChem (163002330)
PubChem (163002331)
PubChem (165429846)
PubChem (166948652)
PubChem (172012042)
68QB
(0)		GUANOSINE-5'-DIPHOSPHATEnon-polymer443.21Chemie (GDP)
PubChem (136073927)
PubChem (135398619)
PubChem (135402030)
PubChem (135431654)
PubChem (135566337)
PubChem (135760556)
PubChem (136026707)
PubChem (136053418)
PubChem (136663964)
PubChem (136664748)
PubChem (136759848)
PubChem (136759849)
PubChem (136759850)
PubChem (136836636)
PubChem (136847074)
PubChem (172898537)
Sequence modifications
1: 1 - 2904 (GenBank: 1929590828)
PDBExternal DatabaseDetails
C 747U 1037988conflict
2: 1 - 120 (GenBank: NR_103249)
PDBExternal DatabaseDetails
A 120U 120conflict
0: 1 - 704 (UniProt: P0A6M8)
PDBExternal DatabaseDetails
Gly 705-expression tag
Ser 706-expression tag
Ser 707-expression tag
Gly 708-expression tag
His 709-expression tag
His 710-expression tag
His 711-expression tag
His 712-expression tag
His 713-expression tag
His 714-expression tag
His 715-expression tag
His 716-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains66
Total formula weight2784912.4
Non-Polymers*Number of molecules3
Total formula weight984.2
All*Total formula weight2785896.6
*Water molecules are not included.

251801

PDB entries from 2026-04-08

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