8Y4W
Sialic acid bound form of Tripartite ATP-independent Periplasmic (TRAP) transporter from Fusobacterium nucleatum.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | N-acetylneuraminate transporter small subunit | polymer | 664 | 74198.9 | 1 | UniProt (Q8RDN8) Pfam (PF04290) Pfam (PF06808) | Fusobacterium nucleatum | |
| 2 | B (B) | FnTRAP specific nanobody | polymer | 128 | 14408.8 | 1 | Vicugna pacos | ||
| 3 | C, D, E (A) | SODIUM ION | non-polymer | 23.0 | 3 | Chemie (NA) | |||
| 4 | F, G (A) | PHOSPHATIDYLETHANOLAMINE | non-polymer | 734.0 | 2 | Chemie (PTY) | |||
| 5 | H (A) | N-acetyl-beta-neuraminic acid | non-polymer | 309.3 | 1 | Chemie (SLB) |
Sequence modifications
A: 1 - 617 (UniProt: Q8RDN8)
| PDB | External Database | Details |
|---|---|---|
| Met -46 | - | initiating methionine |
| Gly -45 | - | expression tag |
| Gly -44 | - | expression tag |
| Ser -43 | - | expression tag |
| His -42 | - | expression tag |
| His -41 | - | expression tag |
| His -40 | - | expression tag |
| His -39 | - | expression tag |
| His -38 | - | expression tag |
| His -37 | - | expression tag |
| Gly -36 | - | expression tag |
| Ser -35 | - | expression tag |
| Trp -34 | - | expression tag |
| Ser -33 | - | expression tag |
| His -32 | - | expression tag |
| Pro -31 | - | expression tag |
| Gln -30 | - | expression tag |
| Phe -29 | - | expression tag |
| Glu -28 | - | expression tag |
| Lys -27 | - | expression tag |
| Ala -26 | - | expression tag |
| Ser -25 | - | expression tag |
| Met -24 | - | expression tag |
| Thr -23 | - | expression tag |
| Gly -22 | - | expression tag |
| Gly -21 | - | expression tag |
| Gln -20 | - | expression tag |
| Gln -19 | - | expression tag |
| Met -18 | - | expression tag |
| Gly -17 | - | expression tag |
| Arg -16 | - | expression tag |
| Asp -15 | - | expression tag |
| Leu -14 | - | expression tag |
| Tyr -13 | - | expression tag |
| Asp -12 | - | expression tag |
| Asp -11 | - | expression tag |
| Asp -10 | - | expression tag |
| Asp -9 | - | expression tag |
| Lys -8 | - | expression tag |
| Asp -7 | - | expression tag |
| Arg -6 | - | expression tag |
| Trp -5 | - | expression tag |
| Gly -4 | - | expression tag |
| Ser -3 | - | expression tag |
| Glu -2 | - | expression tag |
| Leu -1 | - | expression tag |
| Glu 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 88607.7 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 1846.3 | |
| All* | Total formula weight | 90454.0 |
