8Y4D
Crystal structure of SARS-Cov-2 main protease in complex with Bofutrelvir
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | 3C-like proteinase nsp5 | polymer | 296 | 32787.5 | 2 | UniProt (P0DTD1) Pfam (PF05409) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | 3CL-PRO,3CLp,Main protease,Mpro,Non-structural protein 5,nsp5,SARS coronavirus main proteinase |
| 2 | C, D (A, B) | ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide | non-polymer | 452.5 | 2 | BIRD (PRD_002347) Chemie (FHR) | |||
| 3 | E, F (A, B) | water | water | 18.0 | 194 | Chemie (HOH) |
Sequence modifications
A, B: 3 - 298 (UniProt: P0DTD1)
| PDB | External Database | Details |
|---|---|---|
| Ala 142 | Asn 3405 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 65574.9 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 905.1 | |
| All* | Total formula weight | 66480.0 |
