8Y37
Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 1 | Large ribosomal subunit protein bL33B | polymer | 47 | 5684.6 | 1 | UniProt (P66232) Pfam (PF00471) In PDB | Staphylococcus aureus | 50S ribosomal protein L33 2 |
2 | 2 | Large ribosomal subunit protein bL34 | polymer | 43 | 5252.4 | 1 | UniProt (P66254) Pfam (PF00468) In PDB | Staphylococcus aureus | 50S ribosomal protein L34 |
3 | 3 | Large ribosomal subunit protein bL35 | polymer | 64 | 7462.0 | 1 | UniProt (P66277) Pfam (PF01632) In PDB | Staphylococcus aureus | 50S ribosomal protein L35 |
4 | 4 | Large ribosomal subunit protein bL36 | polymer | 37 | 4318.4 | 1 | UniProt (P66300) Pfam (PF00444) In PDB | Staphylococcus aureus | 50S ribosomal protein L36 |
5 | A | 23S ribosomal RNA | polymer | 2921 | 946121.2 | 1 | GenBank (1865318698) | Staphylococcus aureus | |
6 | B | 5S ribosomal RNA | polymer | 115 | 36974.9 | 1 | GenBank (1760048038) | Staphylococcus aureus | |
7 | C | Large ribosomal subunit protein uL2 | polymer | 274 | 29827.6 | 1 | UniProt (P60433) Pfam (PF00181) Pfam (PF03947) In PDB | Staphylococcus aureus | 50S ribosomal protein L2 |
8 | D | Large ribosomal subunit protein uL3 | polymer | 215 | 23199.5 | 1 | UniProt (P60450) Pfam (PF00297) In PDB | Staphylococcus aureus | 50S ribosomal protein L3 |
9 | E | Large ribosomal subunit protein uL4 | polymer | 206 | 22364.5 | 1 | UniProt (P61060) Pfam (PF00573) In PDB | Staphylococcus aureus | 50S ribosomal protein L4 |
10 | F | Large ribosomal subunit protein uL5 | polymer | 175 | 19731.9 | 1 | UniProt (Q7A083) Pfam (PF00673) Pfam (PF00281) In PDB | Staphylococcus aureus | 50S ribosomal protein L5 |
11 | G | Large ribosomal subunit protein uL6 | polymer | 175 | 19501.2 | 1 | UniProt (Q7A084) Pfam (PF00347) In PDB | Staphylococcus aureus | 50S ribosomal protein L6 |
12 | H | Large ribosomal subunit protein uL13 | polymer | 145 | 16359.4 | 1 | UniProt (Q7A089) Pfam (PF00572) In PDB | Staphylococcus aureus | 50S ribosomal protein L13 |
13 | I | Large ribosomal subunit protein uL14 | polymer | 122 | 13157.3 | 1 | UniProt (Q7A081) Pfam (PF00238) In PDB | Staphylococcus aureus | 50S ribosomal protein L14 |
14 | J | Large ribosomal subunit protein uL15 | polymer | 146 | 15628.9 | 1 | UniProt (P0A0F7) Pfam (PF00828) In PDB | Staphylococcus aureus | 50S ribosomal protein L15 |
15 | K | Large ribosomal subunit protein uL16 | polymer | 137 | 15599.4 | 1 | UniProt (Q7A080) Pfam (PF00252) In PDB | Staphylococcus aureus | 50S ribosomal protein L16 |
16 | L | Large ribosomal subunit protein bL17 | polymer | 120 | 13583.5 | 1 | UniProt (Q7A087) Pfam (PF01196) In PDB | Staphylococcus aureus | 50S ribosomal protein L17 |
17 | M | Large ribosomal subunit protein uL18 | polymer | 119 | 13124.1 | 1 | UniProt (Q7A085) Pfam (PF00861) In PDB | Staphylococcus aureus | 50S ribosomal protein L18 |
18 | N | Large ribosomal subunit protein bL19 | polymer | 114 | 13104.4 | 1 | UniProt (Q8NX05) Pfam (PF01245) In PDB | Staphylococcus aureus | 50S ribosomal protein L19 |
19 | O | Large ribosomal subunit protein bL20 | polymer | 116 | 13459.9 | 1 | UniProt (P66109) Pfam (PF00453) In PDB | Staphylococcus aureus | 50S ribosomal protein L20 |
20 | P | Large ribosomal subunit protein bL21 | polymer | 102 | 11354.1 | 1 | UniProt (Q7A0Q2) Pfam (PF00829) In PDB | Staphylococcus aureus | 50S ribosomal protein L21 |
21 | Q | Large ribosomal subunit protein uL22 | polymer | 117 | 12857.9 | 1 | UniProt (Q7A079) Pfam (PF00237) In PDB | Staphylococcus aureus | 50S ribosomal protein L22 |
22 | R | Large ribosomal subunit protein uL23 | polymer | 89 | 10380.1 | 1 | UniProt (Q7A078) Pfam (PF00276) In PDB | Staphylococcus aureus | 50S ribosomal protein L23 |
23 | S | Large ribosomal subunit protein uL24 | polymer | 103 | 11316.2 | 1 | UniProt (P60736) Pfam (PF00467) Pfam (PF17136) In PDB | Staphylococcus aureus | 50S ribosomal protein L24 |
24 | T | Large ribosomal subunit protein bL25 | polymer | 94 | 10462.2 | 1 | UniProt (Q7A1S4) Pfam (PF01386) In PDB | Staphylococcus aureus | 50S ribosomal protein L25,General stress protein CTC |
25 | U | Large ribosomal subunit protein bL27 | polymer | 82 | 8911.1 | 1 | UniProt (P66134) Pfam (PF01016) In PDB | Staphylococcus aureus | 50S ribosomal protein L27 |
26 | V | Large ribosomal subunit protein bL28 | polymer | 58 | 6550.7 | 1 | UniProt (P66154) Pfam (PF00830) In PDB | Staphylococcus aureus | 50S ribosomal protein L28 |
27 | W | Large ribosomal subunit protein uL29 | polymer | 67 | 7845.9 | 1 | UniProt (P66174) Pfam (PF00831) In PDB | Staphylococcus aureus | 50S ribosomal protein L29 |
28 | X | Large ribosomal subunit protein uL30 | polymer | 58 | 6434.5 | 1 | UniProt (P0A0G1) Pfam (PF00327) In PDB | Staphylococcus aureus | 50S ribosomal protein L30 |
29 | Y | Large ribosomal subunit protein bL31B | polymer | 59 | 6909.7 | 1 | UniProt (P66197) Pfam (PF01197) In PDB | Staphylococcus aureus | 50S ribosomal protein L31 type B |
30 | Z | Large ribosomal subunit protein bL32 | polymer | 48 | 5569.6 | 1 | UniProt (P66211) Pfam (PF01783) In PDB | Staphylococcus aureus | 50S ribosomal protein L32 |
31 | A | 7-[4-[3-[[(1~{S},2~{R},5~{R},6~{S},7~{S},8~{R},9~{R},11~{R},13~{R},14~{R})-8-[(2~{S},3~{R},4~{S},6~{R})-4-(dimethylamino)-6-methyl-3-oxidanyl-oxan-2-yl]oxy-2-ethyl-9-methoxy-1,5,7,9,11,13-hexamethyl-4,12,16-tris(oxidanylidene)-3,17-dioxa-15-azabicyclo[12.3.0]heptadecan-6-yl]oxycarbonylamino]propoxy]but-1-ynyl]-1-methyl-4-oxidanylidene-quinoline-3-carboxylic acid | non-polymer | 969.1 | 1 | Chemie (A1D6G) | |||
32 | A | MAGNESIUM ION | non-polymer | 24.3 | 12 | Chemie (MG) | |||
33 | water | water | 18.0 | 6 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 30 |
Total formula weight | 1333047.2 | |
Non-Polymers* | Number of molecules | 13 |
Total formula weight | 1260.8 | |
All* | Total formula weight | 1334308.0 |