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8Y0X

Dormant ribosome with SERBP1

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(L5)
28S rRNApolymer50701640222.11GenBank (86475748)Homo sapiens (human)
2B
(L7)
5S rRNApolymer12138998.11GenBank (23898)Homo sapiens (human)
3C
(L8)
5.8S rRNApolymer15750449.81GenBank (555853)Homo sapiens (human)Human ribosomal DNA complete repeating unit
4D
(LA)
60S ribosomal protein L8polymer25728088.91UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
Homo sapiens (human)Large ribosomal subunit protein uL2
5E
(LB)
60S ribosomal protein L3polymer40346211.11UniProt (P39023)
Pfam (PF00297)
Homo sapiens (human)Large ribosomal subunit protein uL3
6F
(LC)
60S ribosomal protein L4polymer42747804.61UniProt (P36578)
Pfam (PF14374)
Pfam (PF00573)
Homo sapiens (human)Large ribosomal subunit protein uL4
7G
(LD)
60S ribosomal protein L5polymer29734426.81UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
Homo sapiens (human)Large ribosomal subunit protein uL18
8H
(LE)
60S ribosomal protein L6polymer28832810.21UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
Homo sapiens (human)Large ribosomal subunit protein eL6
9I
(LF)
60S ribosomal protein L7polymer24829291.01UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
Homo sapiens (human)Large ribosomal subunit protein uL30
10J
(LG)
60S ribosomal protein L7apolymer26630061.81UniProt (P62424)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL8
11K
(LH)
60S ribosomal protein L9polymer19221899.51UniProt (P32969)
Pfam (PF00347)
Homo sapiens (human)Large ribosomal subunit protein uL6
12L
(LI)
60S ribosomal protein L10-likepolymer21424570.91UniProt (Q96L21)
Pfam (PF00252)
Homo sapiens (human)Large ribosomal subunit protein uL16-like
13M
(LJ)
60S ribosomal protein L11polymer17820288.51UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
Homo sapiens (human)Large ribosomal subunit protein uL5
14N
(LL)
60S ribosomal protein L13polymer21124321.71UniProt (P26373)
Pfam (PF01294)
Homo sapiens (human)Large ribosomal subunit protein eL13
15O
(LM)
60S ribosomal protein L14polymer21523485.01UniProt (P50914)
Pfam (PF01929)
Homo sapiens (human)Large ribosomal subunit protein eL14
16P
(LN)
60S ribosomal protein L15polymer20424207.31UniProt (P61313)
Pfam (PF00827)
Homo sapiens (human)Large ribosomal subunit protein eL15
17Q
(LO)
60S ribosomal protein L13apolymer20323633.41UniProt (P40429)
Pfam (PF00572)
Homo sapiens (human)Large ribosomal subunit protein uL13
18R
(LP)
60S ribosomal protein L17polymer18421443.21UniProt (P18621)
Pfam (PF00237)
Homo sapiens (human)Large ribosomal subunit protein uL22
19S
(LQ)
60S ribosomal protein L18polymer18821687.71UniProt (Q07020)
Pfam (PF17135)
Homo sapiens (human)Large ribosomal subunit protein eL18
20T
(LR)
60S ribosomal protein L19polymer19623535.31UniProt (P84098)
Pfam (PF01280)
Homo sapiens (human)Large ribosomal subunit protein eL19
21U
(LS)
60S ribosomal protein L18apolymer17620808.51UniProt (Q02543)
Pfam (PF01775)
Homo sapiens (human)Large ribosomal subunit protein eL20
22V
(LT)
60S ribosomal protein L21polymer16018610.01UniProt (P46778)
Pfam (PF01157)
Homo sapiens (human)Large ribosomal subunit protein eL21
23W
(LU)
60S ribosomal protein L22polymer12814813.01UniProt (P35268)
Pfam (PF01776)
Homo sapiens (human)Large ribosomal subunit protein eL22
24X
(LV)
60S ribosomal protein L23polymer14014892.51UniProt (P62829)
Pfam (PF00238)
Homo sapiens (human)Large ribosomal subunit protein uL14
25Y
(LW)
60S ribosomal protein L24polymer15717825.11UniProt (P83731)
Pfam (PF01246)
Homo sapiens (human)Large ribosomal subunit protein eL24
26Z
(LX)
60S ribosomal protein L23apolymer15617740.21UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
Homo sapiens (human)Large ribosomal subunit protein uL23
27AA
(LY)
60S ribosomal protein L26polymer14517303.41UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
Homo sapiens (human)Large ribosomal subunit protein uL24
28BA
(LZ)
60S ribosomal protein L27polymer13615835.81UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
Homo sapiens (human)Large ribosomal subunit protein eL27
29CA
(La)
60S ribosomal protein L27apolymer14816604.51UniProt (P46776)
Pfam (PF00828)
Homo sapiens (human)Large ribosomal subunit protein uL15
30DA
(Lb)
60S ribosomal protein L29polymer15917804.31UniProt (P47914)
Pfam (PF01779)
Homo sapiens (human)Large ribosomal subunit protein eL29
31EA
(Lc)
60S ribosomal protein L30polymer11512805.11UniProt (P62888)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL30
32FA
(Ld)
60S ribosomal protein L31polymer12514494.91UniProt (P62899)
Pfam (PF01198)
Homo sapiens (human)Large ribosomal subunit protein eL31
33GA
(Le)
60S ribosomal protein L32polymer13515898.91UniProt (P62910)
Pfam (PF01655)
Homo sapiens (human)Large ribosomal subunit protein eL32
34HA
(Lf)
60S ribosomal protein L35apolymer11012564.71UniProt (P18077)
Pfam (PF01247)
Homo sapiens (human)Large ribosomal subunit protein eL33
35IA
(Lg)
60S ribosomal protein L34polymer11713326.11UniProt (P49207)
Pfam (PF01199)
Homo sapiens (human)Large ribosomal subunit protein eL34
36JA
(Lh)
60S ribosomal protein L35polymer12314593.61UniProt (P42766)
Pfam (PF00831)
Homo sapiens (human)Large ribosomal subunit protein uL29
37KA
(Li)
60S ribosomal protein L36polymer10512290.91UniProt (Q9Y3U8)
Pfam (PF01158)
Homo sapiens (human)Large ribosomal subunit protein eL36
38LA
(Lj)
60S ribosomal protein L37polymer9711111.01UniProt (P61927)
Pfam (PF01907)
Homo sapiens (human)Large ribosomal subunit protein eL37
39MA
(Lk)
60S ribosomal protein L38polymer708238.91UniProt (P63173)
Pfam (PF01781)
Homo sapiens (human)Large ribosomal subunit protein eL38
40NA
(Ll)
60S ribosomal protein L39polymer516426.81UniProt (P62891)
Pfam (PF00832)
Homo sapiens (human)Large ribosomal subunit protein eL39
41OA
(Lm)
Ubiquitin-60S ribosomal protein L40polymer12814758.41UniProt (P62987)
Pfam (PF00240)
Pfam (PF01020)
Homo sapiens (human)CEP52,Ubiquitin A-52 residue ribosomal protein fusion product 1
42PA
(Ln)
60S ribosomal protein L41polymer253473.51UniProt (P62945)
Pfam (PF05162)
Homo sapiens (human)HG12,Large ribosomal subunit protein eL41
43QA
(Lo)
60S ribosomal protein L36apolymer10612477.01UniProt (P83881)
Pfam (PF00935)
Homo sapiens (human)Large ribosomal subunit protein eL42
44RA
(Lp)
60S ribosomal protein L37apolymer9210299.41UniProt (P61513)
Pfam (PF01780)
Homo sapiens (human)Large ribosomal subunit protein eL43
45SA
(Lr)
60S ribosomal protein L28polymer13715784.61UniProt (P46779)
Pfam (PF01778)
Homo sapiens (human)Large ribosomal subunit protein eL28
46TA
(S2)
18S rRNApolymer1869602776.91GenBank (36162)Homo sapiens (human)Human 18S ribosomal RNA
47UA
(S)
Isoform 2 of SERPINE1 mRNA-binding protein 1polymer40244341.81UniProt (Q8NC51)
Pfam (PF16174)
Pfam (PF04774)
Homo sapiens (human)PAI1 RNA-binding protein 1,PAI-RBP1,Plasminogen activator inhibitor 1 RNA-binding protein
48VA
(E)
EtRNApolymer8527379.21GenBank (2634358191)Homo sapiens (human)
49WA
(SA)
40S ribosomal protein SApolymer29532883.91UniProt (P08865)
Pfam (PF00318)
Pfam (PF16122)
Homo sapiens (human)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Colon carcinoma laminin-binding protein,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40,Multidrug resistance-associated protein MGr1-Ag,NEM/1CHD4,Small ribosomal subunit protein uS2
50XA
(SB)
40S ribosomal protein S3apolymer26430002.11UniProt (P61247)
Pfam (PF01015)
Homo sapiens (human)Small ribosomal subunit protein eS1,v-fos transformation effector protein,Fte-1
51YA
(SN)
40S ribosomal protein S13polymer15117259.41UniProt (P62277)
Pfam (PF08069)
Pfam (PF00312)
Homo sapiens (human)Small ribosomal subunit protein uS15
52ZA
(SO)
40S ribosomal protein S14polymer15116302.81UniProt (P62263)
Pfam (PF00411)
Homo sapiens (human)Small ribosomal subunit protein uS11
53AB
(SP)
40S ribosomal protein S15polymer14517076.21UniProt (P62841)
Pfam (PF00203)
Homo sapiens (human)RIG protein,Small ribosomal subunit protein uS19
54BB
(SQ)
40S ribosomal protein S16polymer14616477.41UniProt (P62249)
Pfam (PF00380)
Homo sapiens (human)Small ribosomal subunit protein uS9
55CB
(SR)
40S ribosomal protein S17polymer13515578.21UniProt (P08708)
Pfam (PF00833)
Homo sapiens (human)Small ribosomal subunit protein eS17
56DB
(SS)
40S ribosomal protein S18polymer15217759.81UniProt (P62269)
Pfam (PF00416)
Homo sapiens (human)Ke-3,Ke3,Small ribosomal subunit protein uS13
57EB
(ST)
40S ribosomal protein S19polymer14516091.61UniProt (P39019)
Pfam (PF01090)
Homo sapiens (human)Small ribosomal subunit protein eS19
58FB
(SU)
40S ribosomal protein S20polymer11913398.81UniProt (P60866)
Pfam (PF00338)
Homo sapiens (human)Small ribosomal subunit protein uS10
59GB
(SV)
40S ribosomal protein S21polymer839124.41UniProt (P63220)
Pfam (PF01249)
Homo sapiens (human)Small ribosomal subunit protein eS21
60HB
(SW)
40S ribosomal protein S15apolymer13014865.61UniProt (P62244)
Pfam (PF00410)
Homo sapiens (human)Small ribosomal subunit protein uS8
61IB
(SX)
40S ribosomal protein S23polymer14315844.71UniProt (P62266)
Pfam (PF00164)
Homo sapiens (human)Small ribosomal subunit protein uS12
62JB
(SY)
40S ribosomal protein S24polymer13315463.31UniProt (P62847)
Pfam (PF01282)
Homo sapiens (human)Small ribosomal subunit protein eS24
63KB
(SZ)
40S ribosomal protein S25polymer12513776.21UniProt (P62851)
Pfam (PF03297)
Homo sapiens (human)Small ribosomal subunit protein eS25
64LB
(Sa)
40S ribosomal protein S26polymer11513047.51UniProt (P62854)
Pfam (PF01283)
Homo sapiens (human)Small ribosomal subunit protein eS26
65MB
(Sb)
40S ribosomal protein S27polymer849480.21UniProt (P42677)
Pfam (PF01667)
Homo sapiens (human)Metallopan-stimulin 1,MPS-1,Small ribosomal subunit protein eS27
66NB
(Sc)
40S ribosomal protein S28polymer697855.11UniProt (P62857)
Pfam (PF01200)
Homo sapiens (human)Small ribosomal subunit protein eS28
67OB
(Sd)
40S ribosomal protein S29polymer566690.81UniProt (P62273)
Pfam (PF00253)
Homo sapiens (human)Small ribosomal subunit protein uS14
68PB
(Se)
40S ribosomal protein S30polymer596668.91UniProt (P62861)
Pfam (PF04758)
Homo sapiens (human)Small ribosomal subunit protein eS30
69QB
(Sg)
Receptor of activated protein C kinase 1polymer31735115.71UniProt (P63244)
Pfam (PF00400)
Homo sapiens (human)Cell proliferation-inducing gene 21 protein,Guanine nucleotide-binding protein subunit beta-2-like 1,Guanine nucleotide-binding protein subunit beta-like protein 12.3,Human lung cancer oncogene 7 protein,HLC-7,Receptor for activated C kinase,Small ribosomal subunit protein RACK1
70RB
(CB)
Elongation factor 2polymer85895463.21UniProt (P13639)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
Homo sapiens (human)EF-2
71SB
(SG)
40S ribosomal protein S6polymer24928751.91UniProt (P62753)
Pfam (PF01092)
Homo sapiens (human)Phosphoprotein NP33,Small ribosomal subunit protein eS6
72TB
(SJ)
40S ribosomal protein S9polymer19422641.61UniProt (P46781)
Pfam (PF00163)
Pfam (PF01479)
Homo sapiens (human)Small ribosomal subunit protein uS4
73UB
(SC)
40S ribosomal protein S2polymer29331376.51UniProt (P15880)
Pfam (PF00333)
Pfam (PF03719)
Homo sapiens (human)40S ribosomal protein S4,Protein LLRep3,Small ribosomal subunit protein uS5
74VB
(SF)
40S ribosomal protein S5polymer20422913.51UniProt (P46782)
Pfam (PF00177)
Homo sapiens (human)Small ribosomal subunit protein uS7
75WB
(SH)
40S ribosomal protein S7polymer19422168.91UniProt (P62081)
Pfam (PF01251)
Homo sapiens (human)Small ribosomal subunit protein eS7
76XB
(SD)
40S ribosomal protein S3polymer24326729.41UniProt (P23396)
Pfam (PF07650)
Pfam (PF00189)
Homo sapiens (human)Small ribosomal subunit protein uS3
77YB
(SE)
40S ribosomal protein S4, X isoformpolymer26329654.91UniProt (P62701)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Homo sapiens (human)SCR10,Single copy abundant mRNA protein,Small ribosomal subunit protein eS4
78ZB
(SI)
40S ribosomal protein S8polymer20824263.41UniProt (P62241)
Pfam (PF01201)
Homo sapiens (human)Small ribosomal subunit protein eS8
79AC
(SK)
40S ribosomal protein S10polymer16518933.81UniProt (P46783)
Pfam (PF03501)
Homo sapiens (human)Small ribosomal subunit protein eS10
80BC
(SL)
40S ribosomal protein S11polymer15818468.81UniProt (P62280)
Pfam (PF16205)
Pfam (PF00366)
Homo sapiens (human)Small ribosomal subunit protein uS17
81AD, AE, AF, AG, AH...
(L5, S2, L7, L8, LA...)
MAGNESIUM IONnon-polymer24.3255Chemie (MG)
82CM, DM, UK, VK, WK...
(Sa, Sd, Lg, Lj, Lm...)
ZINC IONnon-polymer65.47Chemie (ZN)
Sequence modifications
E: 1 - 85 (GenBank: 2634358191)
PDBExternal DatabaseDetails
U 34A 8130422variant
C 83U 8130373variant
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains80
Total formula weight3914844.0
Non-Polymers*Number of molecules262
Total formula weight6655.6
All*Total formula weight3921499.6
*Water molecules are not included.

226707

PDB entries from 2024-10-30

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