Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8Y0U

dormant ribosome with STM1

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(LA)
Large ribosomal subunit protein uL2Apolymer25427463.61UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L2-A,L5,RP8,YL6
2B
(SA)
Small ribosomal subunit protein uS2Apolymer25228051.31UniProt (P32905)
Pfam (PF00318)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S0-A,Nucleic acid-binding protein NAB1A
3C
(LB)
Large ribosomal subunit protein uL3polymer38743850.81UniProt (P14126)
Pfam (PF00297)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
4D
(SB)
40S ribosomal protein S1-Apolymer25528798.51UniProt (P33442)
Pfam (PF01015)
Saccharomyces cerevisiae (brewer's yeast)RP10A,Small ribosomal subunit protein eS1-A
5E
(C1)
25S rRNApolymer33961097493.91GenBank (834774822)Saccharomyces cerevisiae (brewer's yeast)
6F
(C4)
5S rRNApolymer12138951.11GenBank (1039024045)Saccharomyces cerevisiae (brewer's yeast)5S rRNA
7G
(C3)
5.8S rRNApolymer15850682.91GenBank (1267176494)Saccharomyces cerevisiae (brewer's yeast)
8H
(LC)
Large ribosomal subunit protein uL4Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L4-A,L2,RP2,YL2
9I
(LD)
Large ribosomal subunit protein uL18polymer29733764.81UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L5,L1,L1a,Ribosomal 5S RNA-binding protein,YL3
10J
(LE)
Large ribosomal subunit protein eL6Bpolymer17620024.51UniProt (P05739)
Pfam (PF01159)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L6-B,L17,RP18,YL16
11K
(LF)
Large ribosomal subunit protein uL30Apolymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L7-A,L6,RP11,YL8
12L
(LG)
Large ribosomal subunit protein eL8Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L8-A,L4,L4-2,L7a-1,Maintenance of killer protein 7,RP6,YL5
13M
(LH)
Large ribosomal subunit protein uL6Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L9-A,L8,RP24,YL11
14N
(LI)
Large ribosomal subunit protein uL16polymer22125410.51UniProt (P41805)
Pfam (PF00252)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L10,L9,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
15O
(LJ)
Large ribosomal subunit protein uL5Bpolymer17419785.71UniProt (Q3E757)
Pfam (PF00281)
Pfam (PF00673)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L11-B,L16,RP39,YL22
16P
(LL)
Large ribosomal subunit protein eL13Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L13-A
17Q
(LM)
Large ribosomal subunit protein eL14Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L14-A
18R
(LN)
Large ribosomal subunit protein eL15Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L15-A,L13,RP15R,YL10,YP18
19S
(LO)
Large ribosomal subunit protein uL13Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L16-A,L13a,L21,RP22,YL15
20T
(LP)
Large ribosomal subunit protein uL22Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L17-A,L20A,YL17
21U
(LQ)
Large ribosomal subunit protein eL18Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L18-A,RP28
22V
(LR)
Large ribosomal subunit protein eL19Apolymer18921762.31UniProt (P0CX82)
Pfam (PF01280)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L19-A,L23,RP15L,RP33,YL14
23W
(LS)
Large ribosomal subunit protein eL20Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L20-A,L18a
24X
(LT)
Large ribosomal subunit protein eL21Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L21-A
25Y
(LU)
Large ribosomal subunit protein eL22Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L22-A,L1c,RP4,YL31
26Z
(LV)
Large ribosomal subunit protein uL14Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L23-A,L17a,YL32
27AA
(LW)
Large ribosomal subunit protein eL24Apolymer15517661.71UniProt (P04449)
Pfam (PF01246)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L24-A,L30,RP29,YL21
28BA
(LX)
Large ribosomal subunit protein uL23polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L25,RP16L,YL25,YP42'
29CA
(LY)
Large ribosomal subunit protein uL24Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L26-A,L33,YL33
30DA
(LZ)
Large ribosomal subunit protein eL27Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L27-A
31EA
(La)
Large ribosomal subunit protein uL15polymer14916761.71UniProt (P02406)
Pfam (PF00828)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L28,L27a,L29,RP44,RP62,YL24
32FA
(Lb)
Large ribosomal subunit protein eL29polymer596691.91UniProt (P05747)
Pfam (PF01779)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L29,YL43
33GA
(Lc)
Large ribosomal subunit protein eL30polymer10511430.41UniProt (P14120)
Pfam (PF01248)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L30,L32,RP73,YL38
34HA
(Ld)
Large ribosomal subunit protein eL31Apolymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L31-A,L34,YL28
35IA
(Le)
Large ribosomal subunit protein eL32polymer13014809.41UniProt (P38061)
Pfam (PF01655)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L32
36JA
(Lf)
Large ribosomal subunit protein eL33Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L33-A,L37,RP47,YL37
37KA
(Lg)
Large ribosomal subunit protein eL34Apolymer12113673.21UniProt (P87262)
Pfam (PF01199)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L34-A
38LA
(Lh)
Large ribosomal subunit protein uL29Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L35-A
39MA
(Li)
Large ribosomal subunit protein eL36Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L36-A,L39,YL39
40NA
(Lj)
Large ribosomal subunit protein eL37Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L37-A,L43,YL35,YP55
41OA
(Lk)
Large ribosomal subunit protein eL38polymer788845.61UniProt (P49167)
Pfam (PF01781)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L38
42PA
(Ll)
Large ribosomal subunit protein eL39polymer506227.41UniProt (P04650)
Pfam (PF00832)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L39,L46,YL40
43QA
(Lm)
Ubiquitin-ribosomal protein eL40A fusion proteinpolymer12814583.11UniProt (P0CH08)
Pfam (PF00240)
Pfam (PF01020)
Saccharomyces cerevisiae (brewer's yeast)
44RA
(Ln)
Large ribosomal subunit protein eL41Apolymer253354.21UniProt (P0CX86)
Pfam (PF05162)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L41-A,L47,YL41
45SA
(Lo)
Large ribosomal subunit protein eL42Apolymer10612246.71UniProt (P0CX27)
Pfam (PF00935)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L42-A,L41,YL27,YP44
46TA
(Lp)
Large ribosomal subunit protein eL43Apolymer9210113.01UniProt (P0CX25)
Pfam (PF01780)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L43-A,L37a,YL35
47UA
(P0)
Large ribosomal subunit protein uL10polymer31233749.11UniProt (P05317)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)
Saccharomyces cerevisiae (brewer's yeast)60S acidic ribosomal protein P0,A0,L10e
48VA
(P2)
Large ribosomal subunit protein uL11Apolymer16517850.61UniProt (P0CX53)
Pfam (PF03946)
Pfam (PF00298)
Saccharomyces cerevisiae (brewer's yeast)60S ribosomal protein L12-A,L15,YL23
49WA
(C2)
18S rRNApolymer1800579761.91GenBank (1262303)Saccharomyces cerevisiae (brewer's yeast)hromosome XII cosmid 9634
50XA
(SC)
40S ribosomal protein S2polymer25427490.81UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
Saccharomyces cerevisiae (brewer's yeast)Omnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5
51YA
(SE)
40S ribosomal protein S4-Apolymer26129469.31UniProt (P0CX35)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Saccharomyces cerevisiae (brewer's yeast)RP5,S7,Small ribosomal subunit protein eS4-A,YS6
52ZA
(SG)
40S ribosomal protein S6-Apolymer23627054.51UniProt (P0CX37)
Pfam (PF01092)
Saccharomyces cerevisiae (brewer's yeast)RP9,S10,Small ribosomal subunit protein eS6-A,YS4
53AB
(SH)
40S ribosomal protein S7-Apolymer19021658.21UniProt (P26786)
Pfam (PF01251)
Saccharomyces cerevisiae (brewer's yeast)RP30,RP40,Small ribosomal subunit protein eS7-A
54BB
(SI)
40S ribosomal protein S8-Apolymer20022537.81UniProt (P0CX39)
Pfam (PF01201)
Saccharomyces cerevisiae (brewer's yeast)RP19,S14,Small ribosomal subunit protein eS8-A,YS9
55CB
(SJ)
40S ribosomal protein S9-Apolymer19722487.91UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
Saccharomyces cerevisiae (brewer's yeast)RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11
56DB
(SK)
Small ribosomal subunit protein eS10Apolymer10512757.41UniProt (Q08745)
Pfam (PF03501)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S10-A
57EB
(SL)
Small ribosomal subunit protein uS17Apolymer15617785.91UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S11-A,RP41,S18,YS12
58FB
(SM)
Small ribosomal subunit protein eS12polymer14315488.61UniProt (P48589)
Pfam (PF01248)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S12
59GB
(SN)
40S ribosomal protein S13polymer15117059.91UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
Saccharomyces cerevisiae (brewer's yeast)S27a,Small ribosomal subunit protein uS15,YS15
60HB
(SO)
Small ribosomal subunit protein uS11Bpolymer13814675.81UniProt (P39516)
Pfam (PF00411)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S14-B,RP59B
61IB
(SV)
Small ribosomal subunit protein eS21Apolymer879758.81UniProt (P0C0V8)
Pfam (PF01249)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S21-A,S26,YS25
62JB
(SW)
40S ribosomal protein S22-Apolymer13014650.11UniProt (P0C0W1)
Pfam (PF00410)
Saccharomyces cerevisiae (brewer's yeast)RP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22
63KB
(SX)
40S ribosomal protein S23-Apolymer14516073.91UniProt (P0CX29)
Pfam (PF00164)
Saccharomyces cerevisiae (brewer's yeast)RP37,S28,Small ribosomal subunit protein uS12-A,YS14
64LB
(SY)
40S ribosomal protein S24-Apolymer13515362.81UniProt (P0CX31)
Pfam (PF01282)
Saccharomyces cerevisiae (brewer's yeast)RP50,Small ribosomal subunit protein eS24-A
65MB
(Sa)
Small ribosomal subunit protein eS26Bpolymer11913480.91UniProt (P39939)
Pfam (PF01283)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S26-B
66NB
(Sb)
40S ribosomal protein S27-Apolymer828893.41UniProt (P35997)
Pfam (PF01667)
Saccharomyces cerevisiae (brewer's yeast)RP61,Small ribosomal subunit protein eS27-A,YS20
67OB
(Se)
40S ribosomal protein S30-Apolymer637137.51UniProt (P0CX33)
Pfam (PF04758)
Saccharomyces cerevisiae (brewer's yeast)Small ribosomal subunit protein eS30-A
68PB
(5)
Eukaryotic translation initiation factor 5A-1polymer15717136.31UniProt (P23301)
Pfam (PF21485)
Pfam (PF01287)
Saccharomyces cerevisiae (brewer's yeast)eIF-5A-1,Hypusine-containing protein HP2,eIF-4D
69QB
(Sf)
Ubiquitin-ribosomal protein eS31 fusion proteinpolymer15217254.21UniProt (P05759)
Pfam (PF00240)
Pfam (PF01599)
Saccharomyces cerevisiae (brewer's yeast)
70RB
(SP)
Small ribosomal subunit protein uS19polymer14216031.91UniProt (Q01855)
Pfam (PF00203)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S15,RIG protein,RP52,S21,YS21
71SB
(SZ)
Small ribosomal subunit protein eS25Apolymer10812067.31UniProt (Q3E792)
Pfam (PF03297)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S25-A,RP45,S31,YS23
72TB
(ST)
Small ribosomal subunit protein eS19Apolymer14415942.11UniProt (P07280)
Pfam (PF01090)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S19-A,RP55A,S16a,YP45,YS16A
73UB
(SQ)
Small ribosomal subunit protein uS9Apolymer14315877.51UniProt (P0CX51)
Pfam (PF00380)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S16-A,RP61R
74VB
(Sd)
Small ribosomal subunit protein uS14Apolymer566675.71UniProt (P41057)
Pfam (PF00253)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S29-A,S36,YS29
75WB
(SU)
Small ribosomal subunit protein uS10polymer12113929.01UniProt (P38701)
Pfam (PF00338)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S20
76XB
(Sc)
Small ribosomal subunit protein eS28Apolymer677605.81UniProt (Q3E7X9)
Pfam (PF01200)
Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S28-A,S33,YS27
77YB
(s)
Suppressor protein STM1polymer27330048.01UniProt (P39015)
Pfam (PF09598)
Saccharomyces cerevisiae (brewer's yeast)3BP1,GU4 nucleic-binding protein 2,G4p2 protein,POP2 multicopy suppressor protein 4,Ribosomal subunits association factor,AF,TOM1 suppressor protein 1,Triplex-binding protein 1
78AC, AD, AE, AF, AG...
(LA, C1, C2, C4, C3...)
MAGNESIUM IONnon-polymer24.3281Chemie (MG)
79AN, NJ, OJ, PJ, QJ...
(Sd, Lg, Lj, Lm, Lo...)
ZINC IONnon-polymer65.47Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains77
Total formula weight3085259.1
Non-Polymers*Number of molecules288
Total formula weight7287.6
All*Total formula weight3092546.7
*Water molecules are not included.

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon