8XUT
XBB.1.5 Spike Trimer in complex with heparan sulfate
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | B, A, C | Spike glycoprotein | polymer | 1269 | 141096.5 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
2 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 48 | Chemie (NAG) | |||
3 | A | 2-O-sulfo-beta-L-altropyranuronic acid | non-polymer | 274.2 | 1 | Chemie (IDU) |
Sequence modifications
B, A, C: 4 - 1273 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Ile 22 | Thr 19 | variant |
- | Leu 24 | deletion |
- | Pro 25 | deletion |
- | Pro 26 | deletion |
Ser 27 | Ala 27 | variant |
Ala 83 | Val 83 | variant |
Asp 142 | Gly 142 | variant |
- | Tyr 144 | deletion |
Gln 146 | His 146 | variant |
Glu 183 | Gln 183 | variant |
Glu 213 | Val 213 | variant |
Val 252 | Gly 252 | variant |
His 339 | Gly 339 | variant |
Thr 346 | Arg 346 | variant |
Ile 368 | Leu 368 | variant |
Phe 371 | Ser 371 | variant |
Pro 373 | Ser 373 | variant |
Phe 375 | Ser 375 | variant |
Ala 376 | Thr 376 | variant |
Asn 405 | Asp 405 | variant |
Ser 408 | Arg 408 | variant |
Asn 417 | Lys 417 | variant |
Lys 440 | Asn 440 | variant |
Pro 445 | Val 445 | variant |
Ser 446 | Gly 446 | variant |
Lys 460 | Asn 460 | variant |
Asn 477 | Ser 477 | variant |
Lys 478 | Thr 478 | variant |
Ala 484 | Glu 484 | variant |
Pro 486 | Phe 486 | variant |
Ser 490 | Phe 490 | variant |
Arg 498 | Gln 498 | variant |
Tyr 501 | Asn 501 | variant |
His 505 | Tyr 505 | variant |
Gly 614 | Asp 614 | variant |
Tyr 655 | His 655 | variant |
Lys 679 | Asn 679 | variant |
His 681 | Pro 681 | variant |
Lys 764 | Asn 764 | variant |
Tyr 796 | Asp 796 | variant |
His 954 | Gln 954 | variant |
Lys 969 | Asn 969 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 423289.5 | |
Non-Polymers* | Number of molecules | 49 |
Total formula weight | 10892.2 | |
All* | Total formula weight | 434181.7 |