8XNK
Cryo-EM structure of SARS-CoV-2 Omicron HV.1 spike protein(6P) in complex with human ACE2
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Angiotensin-converting enzyme 2 | polymer | 603 | 69982.6 | 1 | UniProt (Q9BYF1) Pfam (PF01401) In PDB | Homo sapiens (human) | ACE-related carboxypeptidase,Angiotensin-converting enzyme homolog,ACEH,Metalloprotease MPROT15 |
2 | B, C, D | Spike glycoprotein | polymer | 1227 | 136407.2 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
3 | D, A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 29 | Chemie (NAG) | |||
4 | A | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence modifications
A: 19 - 615 (UniProt: Q9BYF1)
B, C, D: 28 - 1208 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
His 616 | - | expression tag |
His 617 | - | expression tag |
His 618 | - | expression tag |
His 619 | - | expression tag |
His 620 | - | expression tag |
His 621 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Val 19 | - | expression tag |
Asn 20 | - | expression tag |
Leu 21 | - | expression tag |
Ile 22 | - | expression tag |
Thr 23 | - | expression tag |
Arg 24 | - | expression tag |
Thr 25 | - | expression tag |
Gln 26 | - | expression tag |
Ser 27 | - | expression tag |
His 52 | Gln 52 | variant |
Ala 83 | Val 83 | variant |
Asp 142 | Gly 142 | variant |
- | Tyr 144 | deletion |
Gln 146 | His 146 | variant |
Leu 157 | Phe 157 | variant |
Glu 183 | Gln 183 | variant |
Glu 213 | Val 213 | variant |
Val 252 | Gly 252 | variant |
His 339 | Gly 339 | variant |
Thr 346 | Arg 346 | variant |
Ile 368 | Leu 368 | variant |
Phe 371 | Ser 371 | variant |
Pro 373 | Ser 373 | variant |
Phe 375 | Ser 375 | variant |
Ala 376 | Thr 376 | variant |
Asn 405 | Asp 405 | variant |
Ser 408 | Arg 408 | variant |
Asn 417 | Lys 417 | variant |
Lys 440 | Asn 440 | variant |
Pro 445 | Val 445 | variant |
Ser 446 | Gly 446 | variant |
Arg 452 | Leu 452 | variant |
Leu 456 | Phe 456 | variant |
Lys 460 | Asn 460 | variant |
Asn 477 | Ser 477 | variant |
Lys 478 | Thr 478 | variant |
Ala 484 | Glu 484 | variant |
Pro 486 | Phe 486 | variant |
Ser 490 | Phe 490 | variant |
Arg 498 | Gln 498 | variant |
Tyr 501 | Asn 501 | variant |
His 505 | Tyr 505 | variant |
Gly 614 | Asp 614 | variant |
Tyr 655 | His 655 | variant |
Lys 679 | Asn 679 | variant |
His 681 | Pro 681 | variant |
Gly 682 | Arg 682 | engineered mutation |
Ser 683 | Arg 683 | engineered mutation |
Ser 685 | Arg 685 | engineered mutation |
Lys 764 | Asn 764 | variant |
Tyr 796 | Asp 796 | variant |
Pro 817 | Phe 817 | engineered mutation |
Pro 892 | Ala 892 | engineered mutation |
Pro 899 | Ala 899 | engineered mutation |
Pro 942 | Ala 942 | engineered mutation |
His 954 | Gln 954 | variant |
Lys 969 | Asn 969 | variant |
Pro 986 | Lys 986 | engineered mutation |
Pro 987 | Val 987 | engineered mutation |
Gly 1209 | - | expression tag |
Tyr 1210 | - | expression tag |
Ile 1211 | - | expression tag |
Pro 1212 | - | expression tag |
Glu 1213 | - | expression tag |
Ala 1214 | - | expression tag |
Pro 1215 | - | expression tag |
Arg 1216 | - | expression tag |
Asp 1217 | - | expression tag |
Gly 1218 | - | expression tag |
Gln 1219 | - | expression tag |
Ala 1220 | - | expression tag |
Tyr 1221 | - | expression tag |
Val 1222 | - | expression tag |
Arg 1223 | - | expression tag |
Lys 1224 | - | expression tag |
Asp 1225 | - | expression tag |
Gly 1226 | - | expression tag |
Glu 1227 | - | expression tag |
Trp 1228 | - | expression tag |
Val 1229 | - | expression tag |
Leu 1230 | - | expression tag |
Leu 1231 | - | expression tag |
Ser 1232 | - | expression tag |
Thr 1233 | - | expression tag |
Phe 1234 | - | expression tag |
Leu 1235 | - | expression tag |
Ala 1236 | - | expression tag |
His 1237 | - | expression tag |
His 1238 | - | expression tag |
His 1239 | - | expression tag |
His 1240 | - | expression tag |
His 1241 | - | expression tag |
His 1242 | - | expression tag |
His 1243 | - | expression tag |
His 1244 | - | expression tag |
His 1245 | - | expression tag |
His 1246 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 479204.1 | |
Non-Polymers* | Number of molecules | 30 |
Total formula weight | 6480.4 | |
All* | Total formula weight | 485684.5 |