8XBF

Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with antibody O5C2

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C (A, B, C)	Spike glycoprotein	polymer	1278	142010.5	3	UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601)	Severe acute respiratory syndrome coronavirus 2	S glycoprotein,E2,Peplomer protein
2	D, F (D, F)	O5C2, heavy chain	polymer	122	13238.9	2		Homo sapiens
3	E, G (E, G)	O5C2, light chain	polymer	109	11851.1	2		Homo sapiens
4	H, I, J, K, L... (A, B, C)	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	18	Chemie (NAG)

Sequence modifications

A, B, C: 1 - 1208 (UniProt: P0DTC2)

PDB	External Database	Details
Ile 19	Thr 19	engineered mutation
-	Leu 24	deletion
-	Pro 25	deletion
-	Pro 26	deletion
Ser 24	Ala 27	conflict
-	His 69	deletion
-	Val 70	deletion
Asp 142	Gly 142	engineered mutation
Gly 213	Val 213	engineered mutation
Asp 339	Gly 339	engineered mutation
Phe 371	Ser 371	engineered mutation
Pro 373	Ser 373	engineered mutation
Phe 375	Ser 375	engineered mutation
Ala 376	Thr 376	engineered mutation
Asn 405	Asp 405	engineered mutation
Ser 408	Arg 408	engineered mutation
Asn 417	Lys 417	engineered mutation
Lys 440	Asn 440	engineered mutation
Thr 444	Lys 444	engineered mutation
Arg 452	Leu 452	engineered mutation
Lys 460	Asn 460	engineered mutation
Asn 477	Ser 477	engineered mutation
Lys 478	Thr 478	engineered mutation
Ala 484	Glu 484	engineered mutation
Val 486	Phe 486	engineered mutation
Arg 498	Gln 498	engineered mutation
Tyr 501	Asn 501	engineered mutation
His 505	Tyr 505	engineered mutation
Gly 614	Asp 614	engineered mutation
Tyr 655	His 655	engineered mutation
Lys 679	Asn 679	engineered mutation
His 681	Pro 681	engineered mutation
Gly 682	Arg 682	engineered mutation
Ser 683	Arg 683	engineered mutation
Ser 685	Arg 685	engineered mutation
Lys 764	Asn 764	engineered mutation
Tyr 796	Asp 796	engineered mutation
Pro 817	Phe 817	engineered mutation
Lys 856	Asn 856	engineered mutation
Pro 892	Ala 892	engineered mutation
Pro 899	Ala 899	engineered mutation
Pro 942	Ala 942	engineered mutation
His 954	Gln 954	engineered mutation
Lys 969	Asn 969	engineered mutation
Pro 986	Lys 986	conflict
Pro 987	Val 987	engineered mutation
Glu 1209	-	expression tag
Phe 1210	-	expression tag
Gly 1211	-	expression tag
Ser 1212	-	expression tag
Gly 1213	-	expression tag
Gly 1214	-	expression tag
Tyr 1215	-	expression tag
Ile 1216	-	expression tag
Pro 1217	-	expression tag
Glu 1218	-	expression tag
Ala 1219	-	expression tag
Pro 1220	-	expression tag
Arg 1221	-	expression tag
Asp 1222	-	expression tag
Gly 1223	-	expression tag
Gln 1224	-	expression tag
Ala 1225	-	expression tag
Tyr 1226	-	expression tag
Val 1227	-	expression tag
Arg 1228	-	expression tag
Lys 1229	-	expression tag
Asp 1230	-	expression tag
Gly 1231	-	expression tag
Glu 1232	-	expression tag
Trp 1233	-	expression tag
Val 1234	-	expression tag
Leu 1235	-	expression tag
Leu 1236	-	expression tag
Ser 1237	-	expression tag
Thr 1238	-	expression tag
Phe 1239	-	expression tag
Leu 1240	-	expression tag
Lys 1241	-	expression tag
Gly 1242	-	expression tag
Gln 1243	-	expression tag
Asp 1244	-	expression tag
Asn 1245	-	expression tag
Ser 1246	-	expression tag
Ala 1247	-	expression tag
Asp 1248	-	expression tag
Ile 1249	-	expression tag
Gln 1250	-	expression tag
His 1251	-	expression tag
Ser 1252	-	expression tag
Gly 1253	-	expression tag
Arg 1254	-	expression tag
Pro 1255	-	expression tag
Leu 1256	-	expression tag
Glu 1257	-	expression tag
Ser 1258	-	expression tag
Arg 1259	-	expression tag
Gly 1260	-	expression tag
Pro 1261	-	expression tag
Phe 1262	-	expression tag
Glu 1263	-	expression tag
Gln 1264	-	expression tag
Lys 1265	-	expression tag
Leu 1266	-	expression tag
Ile 1267	-	expression tag
Ser 1268	-	expression tag
Glu 1269	-	expression tag
Glu 1270	-	expression tag
Asp 1271	-	expression tag
Leu 1272	-	expression tag
Asn 1273	-	expression tag
Met 1274	-	expression tag
His 1275	-	expression tag
Thr 1276	-	expression tag
Gly 1277	-	expression tag
His 1278	-	expression tag
His 1279	-	expression tag
His 1280	-	expression tag
His 1281	-	expression tag
His 1282	-	expression tag
His 1283	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	7
	Total formula weight	476211.5
Non-Polymers*	Number of molecules	18
	Total formula weight	3981.7
All*	Total formula weight	480193.2

*Water molecules are not included.