8XBF
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with antibody O5C2
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1278 | 142010.5 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
2 | D, F | O5C2, heavy chain | polymer | 122 | 13238.9 | 2 | Homo sapiens | ||
3 | E, G | O5C2, light chain | polymer | 109 | 11851.1 | 2 | Homo sapiens | ||
4 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 18 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1208 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Ile 19 | Thr 19 | engineered mutation |
- | Leu 24 | deletion |
- | Pro 25 | deletion |
- | Pro 26 | deletion |
Ser 24 | Ala 27 | conflict |
- | His 69 | deletion |
- | Val 70 | deletion |
Asp 142 | Gly 142 | engineered mutation |
Gly 213 | Val 213 | engineered mutation |
Asp 339 | Gly 339 | engineered mutation |
Phe 371 | Ser 371 | engineered mutation |
Pro 373 | Ser 373 | engineered mutation |
Phe 375 | Ser 375 | engineered mutation |
Ala 376 | Thr 376 | engineered mutation |
Asn 405 | Asp 405 | engineered mutation |
Ser 408 | Arg 408 | engineered mutation |
Asn 417 | Lys 417 | engineered mutation |
Lys 440 | Asn 440 | engineered mutation |
Thr 444 | Lys 444 | engineered mutation |
Arg 452 | Leu 452 | engineered mutation |
Lys 460 | Asn 460 | engineered mutation |
Asn 477 | Ser 477 | engineered mutation |
Lys 478 | Thr 478 | engineered mutation |
Ala 484 | Glu 484 | engineered mutation |
Val 486 | Phe 486 | engineered mutation |
Arg 498 | Gln 498 | engineered mutation |
Tyr 501 | Asn 501 | engineered mutation |
His 505 | Tyr 505 | engineered mutation |
Gly 614 | Asp 614 | engineered mutation |
Tyr 655 | His 655 | engineered mutation |
Lys 679 | Asn 679 | engineered mutation |
His 681 | Pro 681 | engineered mutation |
Gly 682 | Arg 682 | engineered mutation |
Ser 683 | Arg 683 | engineered mutation |
Ser 685 | Arg 685 | engineered mutation |
Lys 764 | Asn 764 | engineered mutation |
Tyr 796 | Asp 796 | engineered mutation |
Pro 817 | Phe 817 | engineered mutation |
Lys 856 | Asn 856 | engineered mutation |
Pro 892 | Ala 892 | engineered mutation |
Pro 899 | Ala 899 | engineered mutation |
Pro 942 | Ala 942 | engineered mutation |
His 954 | Gln 954 | engineered mutation |
Lys 969 | Asn 969 | engineered mutation |
Pro 986 | Lys 986 | conflict |
Pro 987 | Val 987 | engineered mutation |
Glu 1209 | - | expression tag |
Phe 1210 | - | expression tag |
Gly 1211 | - | expression tag |
Ser 1212 | - | expression tag |
Gly 1213 | - | expression tag |
Gly 1214 | - | expression tag |
Tyr 1215 | - | expression tag |
Ile 1216 | - | expression tag |
Pro 1217 | - | expression tag |
Glu 1218 | - | expression tag |
Ala 1219 | - | expression tag |
Pro 1220 | - | expression tag |
Arg 1221 | - | expression tag |
Asp 1222 | - | expression tag |
Gly 1223 | - | expression tag |
Gln 1224 | - | expression tag |
Ala 1225 | - | expression tag |
Tyr 1226 | - | expression tag |
Val 1227 | - | expression tag |
Arg 1228 | - | expression tag |
Lys 1229 | - | expression tag |
Asp 1230 | - | expression tag |
Gly 1231 | - | expression tag |
Glu 1232 | - | expression tag |
Trp 1233 | - | expression tag |
Val 1234 | - | expression tag |
Leu 1235 | - | expression tag |
Leu 1236 | - | expression tag |
Ser 1237 | - | expression tag |
Thr 1238 | - | expression tag |
Phe 1239 | - | expression tag |
Leu 1240 | - | expression tag |
Lys 1241 | - | expression tag |
Gly 1242 | - | expression tag |
Gln 1243 | - | expression tag |
Asp 1244 | - | expression tag |
Asn 1245 | - | expression tag |
Ser 1246 | - | expression tag |
Ala 1247 | - | expression tag |
Asp 1248 | - | expression tag |
Ile 1249 | - | expression tag |
Gln 1250 | - | expression tag |
His 1251 | - | expression tag |
Ser 1252 | - | expression tag |
Gly 1253 | - | expression tag |
Arg 1254 | - | expression tag |
Pro 1255 | - | expression tag |
Leu 1256 | - | expression tag |
Glu 1257 | - | expression tag |
Ser 1258 | - | expression tag |
Arg 1259 | - | expression tag |
Gly 1260 | - | expression tag |
Pro 1261 | - | expression tag |
Phe 1262 | - | expression tag |
Glu 1263 | - | expression tag |
Gln 1264 | - | expression tag |
Lys 1265 | - | expression tag |
Leu 1266 | - | expression tag |
Ile 1267 | - | expression tag |
Ser 1268 | - | expression tag |
Glu 1269 | - | expression tag |
Glu 1270 | - | expression tag |
Asp 1271 | - | expression tag |
Leu 1272 | - | expression tag |
Asn 1273 | - | expression tag |
Met 1274 | - | expression tag |
His 1275 | - | expression tag |
Thr 1276 | - | expression tag |
Gly 1277 | - | expression tag |
His 1278 | - | expression tag |
His 1279 | - | expression tag |
His 1280 | - | expression tag |
His 1281 | - | expression tag |
His 1282 | - | expression tag |
His 1283 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 7 |
Total formula weight | 476211.5 | |
Non-Polymers* | Number of molecules | 18 |
Total formula weight | 3981.7 | |
All* | Total formula weight | 480193.2 |