8XA0
penton capsomer of the VZV C-capsid
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, J (2, y) | Large tegument protein deneddylase | polymer | 47 | 5500.5 | 2 | UniProt (P10220) | Human alphaherpesvirus 3 (Varicella-zoster virus) | |
| 2 | B, C, D, E, F (A, C, E, F, G) | Major capsid protein | polymer | 1370 | 152365.3 | 5 | UniProt (Q6QCL5) | Human alphaherpesvirus 3 (Varicella-zoster virus) | MCP |
| 3 | G (h) | Capsid vertex component 1 | polymer | 696 | 73998.5 | 1 | UniProt (P10201) Pfam (PF04559) | Human alphaherpesvirus 3 (Varicella-zoster virus) | |
| 4 | H, I (q, u) | Capsid vertex component 2 | polymer | 94 | 10890.3 | 2 | UniProt (P10209) | Human alphaherpesvirus 3 (Varicella-zoster virus) | |
| 5 | K (R) | Tri2A | polymer | 256 | 27729.6 | 1 | Pfam (PF01802) UniProt (by SIFTS) (P09291) | Human alphaherpesvirus 3 (Varicella-zoster virus) | |
| 6 | L (V) | Tri2B | polymer | 263 | 28721.3 | 1 | Pfam (PF01802) UniProt (by SIFTS) (P09291) | Human alphaherpesvirus 3 (Varicella-zoster virus) | |
| 7 | M (Z) | Tri1 | polymer | 286 | 32268.9 | 1 | Pfam (PF03327) UniProt (by SIFTS) (P09276) | Human alphaherpesvirus 3 (Varicella-zoster virus) |
Sequence modifications
A, C, E, F, G: 25 - 1394 (UniProt: Q6QCL5)
h: 1 - 696 (UniProt: P10201)
| PDB | External Database | Details |
|---|---|---|
| Ile 43 | Ala 43 | conflict |
| Phe 44 | His 44 | conflict |
| Phe 45 | Arg 45 | conflict |
| Ala 161 | Asp 161 | conflict |
| Ala 162 | Gly 162 | conflict |
| Ser 185 | Leu 185 | conflict |
| Ala 814 | Gly 814 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Tyr 11 | Thr 11 | conflict |
| Asp 12 | Ile 12 | conflict |
| Leu 13 | Ser 13 | conflict |
| Gly 14 | Ala 14 | conflict |
| His 15 | Thr 15 | conflict |
| Ser 21 | Arg 21 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 13 |
| Total formula weight | 957326.7 | |
| All* | Total formula weight | 957326.7 |
