8X9W
portal vertex capsomer of the VZV C-Capsid
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (A, C) | Major capsid protein | polymer | 1387 | 153965.9 | 2 | UniProt (P09245) Pfam (PF03122) | Human alphaherpesvirus 3 (Varicella-zoster virus) | MCP |
| 2 | B, E, F, G, H... (B, H, I, J, K...) | coiled-coil domain of portal | polymer | 87 | 7422.1 | 10 | Human alphaherpesvirus 3 | ||
| 3 | D (F) | Tri2A | polymer | 297 | 32225.6 | 1 | Pfam (PF01802) UniProt (by SIFTS) (P09291) | Human alphaherpesvirus 3 | |
| 4 | J (O) | Tri2B | polymer | 307 | 33420.5 | 1 | Pfam (PF01802) UniProt (by SIFTS) (P09291) | Human alphaherpesvirus 3 | |
| 5 | O (X) | Tri1 | polymer | 289 | 32583.2 | 1 | Pfam (PF03327) UniProt (by SIFTS) (P09276) | Human alphaherpesvirus 3 | |
| 6 | P (k) | CVC1 | polymer | 550 | 59751.4 | 1 | Pfam (PF04559) UniProt (by SIFTS) (P10201) | Human alphaherpesvirus 3 | |
| 7 | Q, R (l, m) | Capsid vertex component 2 | polymer | 94 | 10890.3 | 2 | UniProt (P10209) | Human alphaherpesvirus 3 (Varicella-zoster virus) | |
| 8 | S, T (n, o) | Large tegument protein deneddylase | polymer | 47 | 5500.5 | 2 | UniProt (P10220) UniProt (by SIFTS) (I1UYK0) | Human alphaherpesvirus 3 (Varicella-zoster virus) |
Sequence modifications
A, C: 14 - 1394 (UniProt: P09245)
| PDB | External Database | Details |
|---|---|---|
| Ala 8 | - | expression tag |
| Ala 9 | - | expression tag |
| Ala 10 | - | expression tag |
| Ala 11 | - | expression tag |
| Ala 12 | - | expression tag |
| Ala 13 | - | expression tag |
| Ile 22 | Leu 22 | conflict |
| Asn 327 | Gln 323 | conflict |
| Ala 329 | Thr 325 | conflict |
| Ser 343 | Gly 339 | conflict |
| Leu 344 | Met 340 | conflict |
| Gly 348 | Ala 344 | conflict |
| Ala 814 | Gly 814 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 20 |
| Total formula weight | 572915.7 | |
| All* | Total formula weight | 572915.7 |
