8WZI
One RBD up state of Spike glycoprotein, SARS-CoV-2
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1261 | 139707.0 | 3 | UniProt (P0DTC2) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
2 | G, I, J, L, M... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 15 | In PDB GlyTouCan (G42666HT) | |||
3 | K | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G21290RB) | |||
4 | S, T, c, d, f | alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 5 | In PDB GlyTouCan (G62182OO) | |||
5 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 21 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1210 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Met -1 | - | initiating methionine |
Ala 0 | - | expression tag |
- | Arg 682 | deletion |
- | Arg 683 | deletion |
- | Ala 684 | deletion |
Ala 682 | Arg 685 | engineered mutation |
Pro 983 | Lys 986 | engineered mutation |
Pro 984 | Val 987 | engineered mutation |
Ser 1211 | - | expression tag |
Gly 1212 | - | expression tag |
Arg 1213 | - | expression tag |
Leu 1214 | - | expression tag |
Val 1215 | - | expression tag |
Pro 1216 | - | expression tag |
Arg 1217 | - | expression tag |
Gly 1218 | - | expression tag |
Ser 1219 | - | expression tag |
Pro 1220 | - | expression tag |
Gly 1221 | - | expression tag |
Ser 1222 | - | expression tag |
Gly 1223 | - | expression tag |
Tyr 1224 | - | expression tag |
Ile 1225 | - | expression tag |
Pro 1226 | - | expression tag |
Glu 1227 | - | expression tag |
Ala 1228 | - | expression tag |
Pro 1229 | - | expression tag |
Arg 1230 | - | expression tag |
Asp 1231 | - | expression tag |
Gly 1232 | - | expression tag |
Gln 1233 | - | expression tag |
Ala 1234 | - | expression tag |
Tyr 1235 | - | expression tag |
Val 1236 | - | expression tag |
Arg 1237 | - | expression tag |
Lys 1238 | - | expression tag |
Asp 1239 | - | expression tag |
Gly 1240 | - | expression tag |
Glu 1241 | - | expression tag |
Trp 1242 | - | expression tag |
Val 1243 | - | expression tag |
Leu 1244 | - | expression tag |
Leu 1245 | - | expression tag |
Ser 1246 | - | expression tag |
Thr 1247 | - | expression tag |
Phe 1248 | - | expression tag |
Leu 1249 | - | expression tag |
Gly 1250 | - | expression tag |
Gly 1251 | - | expression tag |
Thr 1252 | - | expression tag |
Lys 1253 | - | expression tag |
Leu 1254 | - | expression tag |
Glu 1255 | - | expression tag |
Val 1256 | - | expression tag |
Leu 1257 | - | expression tag |
Phe 1258 | - | expression tag |
Gln 1259 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 419121.0 | |
Branched | Number of molecules | 21 |
Total formula weight | 9869.3 | |
Non-Polymers* | Number of molecules | 21 |
Total formula weight | 4645.4 | |
All* | Total formula weight | 433635.6 |