8WZI
One RBD up state of Spike glycoprotein, SARS-CoV-2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1261 | 139707.0 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 | |
| 2 | D, E, F, H, I... (G, I, J, L, M...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 15 | In PDB GlyTouCan (G42666HT) | |||
| 3 | G (K) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G21290RB) | |||
| 4 | M, N, T, U, W (S, T, c, d, f) | alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 5 | In PDB GlyTouCan (G62182OO) | |||
| 5 | AA, BA, CA, DA, EA... (A, B, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 21 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1210 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Met -1 | - | initiating methionine |
| Ala 0 | - | expression tag |
| - | Arg 682 | deletion |
| - | Arg 683 | deletion |
| - | Ala 684 | deletion |
| Ala 682 | Arg 685 | engineered mutation |
| Pro 983 | Lys 986 | engineered mutation |
| Pro 984 | Val 987 | engineered mutation |
| Ser 1211 | - | expression tag |
| Gly 1212 | - | expression tag |
| Arg 1213 | - | expression tag |
| Leu 1214 | - | expression tag |
| Val 1215 | - | expression tag |
| Pro 1216 | - | expression tag |
| Arg 1217 | - | expression tag |
| Gly 1218 | - | expression tag |
| Ser 1219 | - | expression tag |
| Pro 1220 | - | expression tag |
| Gly 1221 | - | expression tag |
| Ser 1222 | - | expression tag |
| Gly 1223 | - | expression tag |
| Tyr 1224 | - | expression tag |
| Ile 1225 | - | expression tag |
| Pro 1226 | - | expression tag |
| Glu 1227 | - | expression tag |
| Ala 1228 | - | expression tag |
| Pro 1229 | - | expression tag |
| Arg 1230 | - | expression tag |
| Asp 1231 | - | expression tag |
| Gly 1232 | - | expression tag |
| Gln 1233 | - | expression tag |
| Ala 1234 | - | expression tag |
| Tyr 1235 | - | expression tag |
| Val 1236 | - | expression tag |
| Arg 1237 | - | expression tag |
| Lys 1238 | - | expression tag |
| Asp 1239 | - | expression tag |
| Gly 1240 | - | expression tag |
| Glu 1241 | - | expression tag |
| Trp 1242 | - | expression tag |
| Val 1243 | - | expression tag |
| Leu 1244 | - | expression tag |
| Leu 1245 | - | expression tag |
| Ser 1246 | - | expression tag |
| Thr 1247 | - | expression tag |
| Phe 1248 | - | expression tag |
| Leu 1249 | - | expression tag |
| Gly 1250 | - | expression tag |
| Gly 1251 | - | expression tag |
| Thr 1252 | - | expression tag |
| Lys 1253 | - | expression tag |
| Leu 1254 | - | expression tag |
| Glu 1255 | - | expression tag |
| Val 1256 | - | expression tag |
| Leu 1257 | - | expression tag |
| Phe 1258 | - | expression tag |
| Gln 1259 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 419121.0 | |
| Branched | Number of molecules | 21 |
| Total formula weight | 9869.3 | |
| Non-Polymers* | Number of molecules | 21 |
| Total formula weight | 4645.4 | |
| All* | Total formula weight | 433635.6 |
