8WQ2
Structural basis of translation inhibition by a valine tRNA-derived fragment
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A16S) | RNA (1328-MER) | polymer | 1501 | 486920.5 | 1 | GenBank (2440479486) | Sulfolobus acidocaldarius DSM 639 | |
| 2 | B (VTRF) | RNA (26-MER) | polymer | 26 | 8411.9 | 1 | Haloferax volcanii | ||
| 3 | C (AS2P) | 30S ribosomal protein S2 | polymer | 196 | 22474.0 | 1 | UniProt (P39478) Pfam (PF00318) | Sulfolobus acidocaldarius DSM 639 | |
| 4 | D (AS4E) | 30S ribosomal protein S4e | polymer | 240 | 27340.0 | 1 | UniProt (O05634) Pfam (PF01479) Pfam (PF00900) | Sulfolobus acidocaldarius DSM 639 | |
| 5 | E (AS4P) | 30S ribosomal protein S4 | polymer | 166 | 19440.6 | 1 | UniProt (P39467) Pfam (PF00163) Pfam (PF01479) | Sulfolobus acidocaldarius DSM 639 | |
| 6 | F (AS5P) | 30S ribosomal protein S5 | polymer | 204 | 22782.7 | 1 | UniProt (O05641) Pfam (PF03719) Pfam (PF00333) | Sulfolobus acidocaldarius DSM 639 | |
| 7 | G (AS6E) | 30S ribosomal protein S6e | polymer | 105 | 11479.4 | 1 | UniProt (Q4JAI1) Pfam (PF01092) | Sulfolobus acidocaldarius DSM 639 | |
| 8 | H (AS8E) | 30S ribosomal protein S8e | polymer | 126 | 14113.2 | 1 | UniProt (Q4JAP5) Pfam (PF01201) | Sulfolobus acidocaldarius DSM 639 | |
| 9 | I (S11P) | 30S ribosomal protein S11 | polymer | 128 | 13652.6 | 1 | UniProt (P39469) Pfam (PF00411) | Sulfolobus acidocaldarius DSM 639 | |
| 10 | J (S12P) | 30S ribosomal protein S12 | polymer | 143 | 15703.6 | 1 | UniProt (P11524) Pfam (PF00164) | Sulfolobus acidocaldarius DSM 639 | |
| 11 | K (S15P) | 30S ribosomal protein S15 | polymer | 149 | 17438.4 | 1 | UniProt (Q4JAI3) Pfam (PF08069) Pfam (PF00312) | Sulfolobus acidocaldarius DSM 639 | |
| 12 | L (S17P) | 30S ribosomal protein S17 | polymer | 111 | 12602.6 | 1 | UniProt (Q4JB49) Pfam (PF00366) | Sulfolobus acidocaldarius DSM 639 | |
| 13 | M (S24E) | 30S ribosomal protein S24e | polymer | 96 | 10765.2 | 1 | UniProt (Q4JAF9) Pfam (PF01282) | Sulfolobus acidocaldarius DSM 639 | |
| 14 | N (S27E) | 30S ribosomal protein S27e | polymer | 59 | 6577.0 | 1 | UniProt (Q4J9B1) Pfam (PF01667) | Sulfolobus acidocaldarius DSM 639 | |
| 15 | O (S3AE) | 30S ribosomal protein S3Ae | polymer | 189 | 21876.6 | 1 | UniProt (Q4JB17) Pfam (PF01015) | Sulfolobus acidocaldarius DSM 639 | Ribosomal protein S1e |
| 16 | P (AS3P) | 30S ribosomal protein S3 | polymer | 201 | 22396.5 | 1 | UniProt (Q4JB46) Pfam (PF07650) Pfam (PF00189) | Sulfolobus acidocaldarius DSM 639 | |
| 17 | Q (AS7P) | 30S ribosomal protein S7 | polymer | 193 | 21862.3 | 1 | UniProt (P17198) Pfam (PF00177) | Sulfolobus acidocaldarius DSM 639 | |
| 18 | R (AS9P) | 30S ribosomal protein S9 | polymer | 136 | 15638.1 | 1 | UniProt (P39468) Pfam (PF00380) | Sulfolobus acidocaldarius DSM 639 | |
| 19 | S (S10P) | 30S ribosomal protein S10 | polymer | 100 | 11775.9 | 1 | UniProt (P17199) Pfam (PF00338) | Sulfolobus acidocaldarius DSM 639 | |
| 20 | T (S13P) | 30S ribosomal protein S13 | polymer | 147 | 17140.8 | 1 | UniProt (P39470) Pfam (PF00416) | Sulfolobus acidocaldarius DSM 639 | |
| 21 | U (S14P) | 30S ribosomal protein S14 type Z | polymer | 52 | 6190.4 | 1 | UniProt (O05635) Pfam (PF00253) | Sulfolobus acidocaldarius DSM 639 | |
| 22 | V (S17E) | 30S ribosomal protein S17e | polymer | 62 | 7336.4 | 1 | UniProt (Q4JAX5) Pfam (PF00833) | Sulfolobus acidocaldarius DSM 639 | |
| 23 | W (S19E) | 30S ribosomal protein S19e | polymer | 150 | 17559.7 | 1 | UniProt (Q4J8U1) Pfam (PF01090) | Sulfolobus acidocaldarius DSM 639 | |
| 24 | X (S19P) | 30S ribosomal protein S19 | polymer | 115 | 13800.4 | 1 | UniProt (Q4JB44) Pfam (PF00203) | Sulfolobus acidocaldarius DSM 639 | |
| 25 | Y (S27A) | 30S ribosomal protein S27ae | polymer | 54 | 6261.4 | 1 | UniProt (Q4JAG0) Pfam (PF01599) | Sulfolobus acidocaldarius DSM 639 | |
| 26 | Z (S28E) | 30S ribosomal protein S28e | polymer | 63 | 7094.3 | 1 | UniProt (Q4JAV1) Pfam (PF01200) | Sulfolobus acidocaldarius DSM 639 | |
| 27 | AA (SL7A) | 50S ribosomal protein L7Ae | polymer | 123 | 13351.5 | 1 | UniProt (Q4J8P1) Pfam (PF01248) | Sulfolobus acidocaldarius DSM 639 | Ribosomal protein L8e |
| 28 | BA (AS8P) | Small ribosomal subunit protein uS8 | polymer | 130 | 14624.2 | 1 | UniProt (O05636) Pfam (PF00410) | Sulfolobus acidocaldarius DSM 639 | 30S ribosomal protein S8 |
| 29 | AB, AC, BB, BC, CA... (AS2P, AS5P, AS8P) | UNKNOWN LIGAND | non-polymer | 103.1 | 57 | Chemie (UNL) |
Sequence modifications
A16S: 1 - 1503 (GenBank: 2440479486)
| PDB | External Database | Details |
|---|---|---|
| - | U 1332690 | deletion |
| - | C 1332689 | deletion |
| G 1450 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 28 |
| Total formula weight | 886610.1 | |
| Non-Polymers* | Number of molecules | 57 |
| Total formula weight | 5877.8 | |
| All* | Total formula weight | 892487.9 |
