8WH9
Structure of DDM1-nucleosome complex in ADP-BeFx state
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E (A, E) | Histone H3.1 | polymer | 136 | 15301.0 | 2 | UniProt (P59226) Pfam (PF00125) | Arabidopsis thaliana (thale cress) | |
| 2 | B, F (B, F) | Histone H4 | polymer | 103 | 11436.5 | 2 | UniProt (P59259) Pfam (PF15511) | Arabidopsis thaliana (thale cress) | |
| 3 | C, G (C, G) | Histone H2A.6 | polymer | 130 | 13680.9 | 2 | UniProt (Q9LD28) Pfam (PF00125) Pfam (PF16211) | Arabidopsis thaliana (thale cress) | HTA1,Protein RESISTANT TO AGROBACTERIUM TRANSFORMATION 5 |
| 4 | D, H (D, H) | Histone H2B.6 | polymer | 150 | 16474.5 | 2 | UniProt (O23629) Pfam (PF00125) | Arabidopsis thaliana (thale cress) | H2BAt,HTB9 |
| 5 | I (I) | DNA (sense strand) | polymer | 147 | 45123.8 | 1 | synthetic construct | ||
| 6 | J (J) | DNA (antisense strand) | polymer | 147 | 45626.0 | 1 | synthetic construct | ||
| 7 | K (K) | ATP-dependent DNA helicase DDM1 | polymer | 765 | 86844.8 | 1 | UniProt (Q9XFH4) Pfam (PF00176) Pfam (PF00271) | Arabidopsis thaliana (thale cress) | Protein CHROMATIN REMODELING 1,AtCHR1,CHR01,Protein DECREASED DNA METHYLATION 1,AtDDM1,Protein SOMNIFEROUS 1,SWI/SNF2-related matrix-associated actin-dependent regulator of chromatin DDM1 |
| 8 | L (K) | BERYLLIUM TRIFLUORIDE ION | non-polymer | 66.0 | 1 | Chemie (BEF) | |||
| 9 | M (K) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) |
Sequence modifications
K: 1 - 764 (UniProt: Q9XFH4)
| PDB | External Database | Details |
|---|---|---|
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 11 |
| Total formula weight | 291380.1 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 493.2 | |
| All* | Total formula weight | 291873.3 |
