8WH8
Structure of DDM1-nucleosome complex in ADP state
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, E | Histone H3.1 | polymer | 136 | 15301.0 | 2 | UniProt (P59226) Pfam (PF00125) In PDB | Arabidopsis thaliana (thale cress) | |
2 | B, F | Histone H4 | polymer | 103 | 11436.5 | 2 | UniProt (P59259) Pfam (PF15511) In PDB | Arabidopsis thaliana (thale cress) | |
3 | C, G | Histone H2A.6 | polymer | 130 | 13680.9 | 2 | UniProt (Q9LD28) Pfam (PF00125) Pfam (PF16211) In PDB | Arabidopsis thaliana (thale cress) | HTA1,Protein RESISTANT TO AGROBACTERIUM TRANSFORMATION 5 |
4 | D, H | Histone H2B.6 | polymer | 150 | 16474.5 | 2 | UniProt (O23629) Pfam (PF00125) In PDB | Arabidopsis thaliana (thale cress) | H2BAt,HTB9 |
5 | I | DNA (sense strand) | polymer | 147 | 45123.8 | 1 | synthetic construct | ||
6 | J | DNA (antisense strand) | polymer | 147 | 45626.0 | 1 | synthetic construct | ||
7 | K | ATP-dependent DNA helicase DDM1 | polymer | 765 | 86844.8 | 1 | UniProt (Q9XFH4) Pfam (PF00176) Pfam (PF00271) In PDB | Arabidopsis thaliana (thale cress) | Protein CHROMATIN REMODELING 1,AtCHR1,CHR01,Protein DECREASED DNA METHYLATION 1,AtDDM1,Protein SOMNIFEROUS 1,SWI/SNF2-related matrix-associated actin-dependent regulator of chromatin DDM1 |
8 | K | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) |
Sequence modifications
K: 1 - 764 (UniProt: Q9XFH4)
PDB | External Database | Details |
---|---|---|
Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 11 |
Total formula weight | 291380.1 | |
Non-Polymers* | Number of molecules | 1 |
Total formula weight | 427.2 | |
All* | Total formula weight | 291807.3 |