8W6C
CryoEM structure of NaDC1 with Citrate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Solute carrier family 13 member 2 | polymer | 605 | 65934.3 | 2 | UniProt (Q13183) Pfam (PF00939) | Homo sapiens (human) | Na(+)/dicarboxylate cotransporter 1,NaDC-1,Renal sodium/dicarboxylate cotransporter |
| 2 | C, D, J, K (A, B) | SODIUM ION | non-polymer | 23.0 | 4 | Chemie (NA) PubChem (923) | |||
| 3 | E, G (A) | CHOLESTEROL HEMISUCCINATE | non-polymer | 486.7 | 2 | Chemie (Y01) PubChem (16219150) PubChem (22210610) PubChem (65082) PubChem (363416) PubChem (45489984) PubChem (500055) PubChem (60078761) PubChem (57163942) PubChem (73440805) PubChem (89891013) PubChem (13301926) PubChem (13301927) PubChem (99567469) PubChem (99567468) PubChem (124427194) PubChem (124897021) PubChem (124897020) PubChem (10005657) PubChem (130340716) PubChem (11969853) PubChem (124301053) PubChem (124302591) PubChem (124303794) PubChem (124421343) PubChem (124427195) PubChem (137392566) PubChem (137496323) PubChem (124914595) PubChem (124914596) PubChem (131705526) PubChem (155804219) PubChem (137332121) PubChem (137496357) PubChem (146157332) PubChem (169132514) PubChem (154929912) PubChem (155199678) PubChem (156327905) PubChem (156426247) PubChem (156516588) PubChem (166979870) PubChem (167024614) PubChem (169132513) PubChem (170117245) PubChem (172400028) | |||
| 4 | F, L (A, B) | CITRIC ACID | non-polymer | 192.1 | 2 | Chemie (CIT) PubChem (311) | |||
| 5 | H, I (A, B) | 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE | non-polymer | 705.0 | 2 | Chemie (3PH) PubChem (447938) PubChem (86641) PubChem (16211043) | |||
| 6 | M, N (A, B) | water | water | 18.0 | 2 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 592 (UniProt: Q13183)
| PDB | External Database | Details |
|---|---|---|
| Met -12 | - | initiating methionine |
| Ala -11 | - | expression tag |
| Asp -10 | - | expression tag |
| Tyr -9 | - | expression tag |
| Lys -8 | - | expression tag |
| Asp -7 | - | expression tag |
| Asp -6 | - | expression tag |
| Asp -5 | - | expression tag |
| Asp -4 | - | expression tag |
| Lys -3 | - | expression tag |
| Ser -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Arg 0 | - | expression tag |
| Val 550 | Ile 550 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 131868.5 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 2859.7 | |
| All* | Total formula weight | 134728.2 |
