8VYM
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) in the postfusion conformation in complex with 1G2 and 7H3 Fabs
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Envelope glycoprotein B | polymer | 786 | 88931.4 | 3 | UniProt (P13201) Pfam (PF12154) Pfam (PF17416) Pfam (PF17417) Pfam (PF00606) In PDB | Human betaherpesvirus 5 | gB |
2 | D, G, J | 1G2 Fab Heavy Chain | polymer | 224 | 24206.2 | 3 | Homo sapiens | ||
3 | E, F, I | 1G2 Fab Light Chain | polymer | 214 | 22853.1 | 3 | Homo sapiens | ||
4 | H | 7H3 Fab Light Chain | polymer | 216 | 22879.4 | 1 | Homo sapiens | ||
5 | K | 7H3 Fab Heavy Chain | polymer | 234 | 25152.1 | 1 | Homo sapiens | ||
6 | a, L, M, N, O... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 13 | In PDB GlyTouCan (G42666HT) | |||
7 | R, V, W | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
8 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 10 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 704 (UniProt: P13201)
PDB | External Database | Details |
---|---|---|
Ser 246 | Cys 246 | conflict |
Ser 457 | Arg 457 | conflict |
Ser 460 | Arg 460 | conflict |
Gly 705 | - | expression tag |
Ser 706 | - | expression tag |
Gly 707 | - | expression tag |
Tyr 708 | - | expression tag |
Ile 709 | - | expression tag |
Pro 710 | - | expression tag |
Glu 711 | - | expression tag |
Ala 712 | - | expression tag |
Pro 713 | - | expression tag |
Arg 714 | - | expression tag |
Asp 715 | - | expression tag |
Gly 716 | - | expression tag |
Gln 717 | - | expression tag |
Ala 718 | - | expression tag |
Tyr 719 | - | expression tag |
Val 720 | - | expression tag |
Arg 721 | - | expression tag |
Lys 722 | - | expression tag |
Asp 723 | - | expression tag |
Gly 724 | - | expression tag |
Glu 725 | - | expression tag |
Trp 726 | - | expression tag |
Val 727 | - | expression tag |
Leu 728 | - | expression tag |
Leu 729 | - | expression tag |
Ser 730 | - | expression tag |
Thr 731 | - | expression tag |
Phe 732 | - | expression tag |
Leu 733 | - | expression tag |
Gly 734 | - | expression tag |
Ala 735 | - | expression tag |
Ala 736 | - | expression tag |
Ala 737 | - | expression tag |
Ser 738 | - | expression tag |
Leu 739 | - | expression tag |
Glu 740 | - | expression tag |
Val 741 | - | expression tag |
Leu 742 | - | expression tag |
Phe 743 | - | expression tag |
Gln 744 | - | expression tag |
Gly 745 | - | expression tag |
Pro 746 | - | expression tag |
Gly 747 | - | expression tag |
His 748 | - | expression tag |
His 749 | - | expression tag |
His 750 | - | expression tag |
His 751 | - | expression tag |
His 752 | - | expression tag |
His 753 | - | expression tag |
His 754 | - | expression tag |
His 755 | - | expression tag |
Ser 756 | - | expression tag |
Ala 757 | - | expression tag |
Trp 758 | - | expression tag |
Ser 759 | - | expression tag |
His 760 | - | expression tag |
Pro 761 | - | expression tag |
Gln 762 | - | expression tag |
Phe 763 | - | expression tag |
Glu 764 | - | expression tag |
Lys 765 | - | expression tag |
Gly 766 | - | expression tag |
Gly 767 | - | expression tag |
Ala 768 | - | expression tag |
Ser 769 | - | expression tag |
Gly 770 | - | expression tag |
Gly 771 | - | expression tag |
Gly 772 | - | expression tag |
Gly 773 | - | expression tag |
Ser 774 | - | expression tag |
Gly 775 | - | expression tag |
Gly 776 | - | expression tag |
Ser 777 | - | expression tag |
Ala 778 | - | expression tag |
Trp 779 | - | expression tag |
Ser 780 | - | expression tag |
His 781 | - | expression tag |
Pro 782 | - | expression tag |
Gln 783 | - | expression tag |
Phe 784 | - | expression tag |
Glu 785 | - | expression tag |
Lys 786 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 11 |
Total formula weight | 456003.6 | |
Branched | Number of molecules | 16 |
Total formula weight | 7276.8 | |
Non-Polymers* | Number of molecules | 10 |
Total formula weight | 2212.1 | |
All* | Total formula weight | 465492.5 |