8VWQ
E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | 23S ribosomal RNA | polymer | 2903 | 941306.3 | 1 | GenBank (1914786293) | Escherichia coli | |
| 2 | B (2) | 16S ribosomal RNA | polymer | 1540 | 499238.0 | 1 | GenBank (1388194076) | Escherichia coli | |
| 3 | C (3) | 5S ribosomal RNA | polymer | 120 | 38790.1 | 1 | GenBank (1273279017) | Escherichia coli | |
| 4 | D (4) | messenger RNA | polymer | 18 | 5700.5 | 1 | Escherichia coli | ||
| 5 | E (5) | tRNA^ProL (GGG) | polymer | 77 | 24876.8 | 1 | GenBank (1847051788) | Escherichia coli | |
| 6 | F (6) | Elongation factor P | polymer | 188 | 20755.4 | 1 | UniProt (C3SGD7) | Escherichia coli | EF-P |
| 7 | G (A) | Large ribosomal subunit protein uL1 | polymer | 224 | 23761.5 | 1 | UniProt (C3SIC2) | Escherichia coli | |
| 8 | H (B) | 50S ribosomal protein L2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) | Escherichia coli | Large ribosomal subunit protein uL2 |
| 9 | I (C) | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) | Escherichia coli | Large ribosomal subunit protein uL3 |
| 10 | J (D) | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (A1AGK6) Pfam (PF00573) | Escherichia coli | |
| 11 | K (E) | 50S ribosomal protein L5 | polymer | 179 | 20333.6 | 1 | UniProt (A0A140N5A3) | Escherichia coli | |
| 12 | L (F) | 50S ribosomal protein L6 | polymer | 177 | 18932.8 | 1 | UniProt (C3SR17) | Escherichia coli | |
| 13 | M (G) | Large ribosomal subunit protein bL9 | polymer | 149 | 15789.0 | 1 | UniProt (C3SFP2) | Escherichia coli | |
| 14 | N (J) | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (S1EW51) | Escherichia coli | |
| 15 | O (K) | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (S1NW45) | Escherichia coli | |
| 16 | P (L) | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (A0A037Y8L6) | Escherichia coli | |
| 17 | Q (M) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) | Escherichia coli | Large ribosomal subunit protein uL16 |
| 18 | R (N) | Large ribosomal subunit protein bL17 | polymer | 127 | 14393.7 | 1 | UniProt (C3SR72) | Escherichia coli | |
| 19 | S (O) | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (S1E9N8) | Escherichia coli | |
| 20 | T (P) | 50S ribosomal protein L19 | polymer | 115 | 13159.3 | 1 | UniProt (V0AJX1) | Escherichia coli | |
| 21 | U (Q) | 50S ribosomal protein L20 | polymer | 118 | 13528.0 | 1 | UniProt (B7MAS6) Pfam (PF00453) | Escherichia coli | |
| 22 | V (R) | Ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (C3SSG2) | Escherichia coli | |
| 23 | W (S) | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) | Escherichia coli | Large ribosomal subunit protein uL22 |
| 24 | X (T) | 50S ribosomal protein L23 | polymer | 100 | 11222.2 | 1 | UniProt (U9Y6C4) | Escherichia coli | |
| 25 | Y (U) | 50S ribosomal protein L24 | polymer | 104 | 11339.3 | 1 | UniProt (A0A1X3KWX7) | Escherichia coli | |
| 26 | Z (V) | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (D7XH79) | Escherichia coli | |
| 27 | AA (W) | Large ribosomal subunit protein bL27 | polymer | 84 | 9015.3 | 1 | UniProt (C3SSG7) | Escherichia coli | |
| 28 | BA (X) | 50S ribosomal protein L28 | polymer | 78 | 9027.6 | 1 | UniProt (A0A1X3JA73) | Escherichia coli | |
| 29 | CA (Y) | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (D6IEL0) | Escherichia coli | |
| 30 | DA (Z) | Large ribosomal subunit protein uL30 | polymer | 59 | 6554.8 | 1 | UniProt (C3SR32) | Escherichia coli | |
| 31 | EA (a) | 50S ribosomal protein L31 | polymer | 70 | 7887.1 | 1 | UniProt (P0A7M9) Pfam (PF01197) | Escherichia coli | Large ribosomal subunit protein bL31-A |
| 32 | FA (b) | 50S ribosomal protein L32 | polymer | 57 | 6463.4 | 1 | UniProt (D7XI28) | Escherichia coli | |
| 33 | GA (c) | Large ribosomal subunit protein bL33 | polymer | 55 | 6388.6 | 1 | UniProt (C3SME7) | Escherichia coli | |
| 34 | HA (d) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (B7MGC4) Pfam (PF00468) | Escherichia coli | |
| 35 | IA (e) | 50S ribosomal protein L35 | polymer | 65 | 7313.0 | 1 | UniProt (P0A7Q1) Pfam (PF01632) | Escherichia coli | Large ribosomal subunit protein bL35,Ribosomal protein A |
| 36 | JA (f) | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (A0A0E2L017) | Escherichia coli | |
| 37 | KA (g) | 30S ribosomal protein S2 | polymer | 241 | 26781.7 | 1 | UniProt (C3TPN2) | Escherichia coli | |
| 38 | LA (h) | 30S ribosomal protein S3 | polymer | 233 | 26031.3 | 1 | UniProt (B7MCS9) Pfam (PF07650) Pfam (PF00189) | Escherichia coli | |
| 39 | MA (i) | 30S ribosomal protein S4 | polymer | 206 | 23514.2 | 1 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) | Escherichia coli | |
| 40 | NA (j) | 30S ribosomal protein S5 | polymer | 167 | 17629.4 | 1 | UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) | Escherichia coli | |
| 41 | OA (k) | 30S ribosomal protein S6 | polymer | 135 | 15727.5 | 1 | UniProt (P02358) Pfam (PF01250) | Escherichia coli | Small ribosomal subunit protein bS6 |
| 42 | PA (l) | 30S ribosomal protein S7 | polymer | 179 | 20055.2 | 1 | UniProt (P02359) Pfam (PF00177) | Escherichia coli | Small ribosomal subunit protein uS7 |
| 43 | QA (m) | 30S ribosomal protein S8 | polymer | 130 | 14146.6 | 1 | UniProt (D7XKZ3) | Escherichia coli | |
| 44 | RA (n) | Small ribosomal subunit protein uS9 | polymer | 130 | 14886.3 | 1 | UniProt (C3SRY2) | Escherichia coli | |
| 45 | SA (o) | 30S ribosomal protein S10 | polymer | 103 | 11755.6 | 1 | UniProt (V0ANK5) | Escherichia coli | |
| 46 | TA (p) | 30S ribosomal protein S11 | polymer | 129 | 13871.0 | 1 | UniProt (B7MCR3) Pfam (PF00411) | Escherichia coli | |
| 47 | UA (q) | Small ribosomal subunit protein uS12 | polymer | 124 | 13814.2 | 1 | UniProt (C3SQR7) | Escherichia coli | |
| 48 | VA (r) | 30S ribosomal protein S13 | polymer | 118 | 13128.5 | 1 | UniProt (A0A7U9IV78) | Escherichia coli | |
| 49 | WA (s) | Small ribosomal subunit protein uS14 | polymer | 101 | 11606.6 | 1 | UniProt (A0A2X1PQW4) | Escherichia coli | |
| 50 | XA (t) | Small ribosomal subunit protein uS15 | polymer | 89 | 10290.8 | 1 | UniProt (C3SSQ7) | Escherichia coli | |
| 51 | YA (u) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (C3SYP2) | Escherichia coli | |
| 52 | ZA (v) | Small ribosomal subunit protein uS17 | polymer | 84 | 9724.5 | 1 | UniProt (C3SQY7) | Escherichia coli | |
| 53 | AB (w) | 30S ribosomal protein S18 | polymer | 75 | 9005.5 | 1 | UniProt (A0A0E2KXL3) | Escherichia coli | |
| 54 | BB (x) | 30S ribosomal protein S19 | polymer | 92 | 10455.4 | 1 | UniProt (S1EA57) | Escherichia coli | |
| 55 | CB (y) | 30S ribosomal protein S20 | polymer | 87 | 9708.5 | 1 | UniProt (C3TRH7) | Escherichia coli | |
| 56 | DB (z) | 30S ribosomal protein S21 | polymer | 71 | 8524.0 | 1 | UniProt (A0A0E2L2J1) | Escherichia coli | |
| 57 | AC, AD, AE, AF, AG... (1, 2, D, e, f...) | MAGNESIUM ION | non-polymer | 24.3 | 586 | Chemie (MG) | |||
| 58 | SV (5) | LYSINE | non-polymer | 147.2 | 1 | Chemie (LYS) | |||
| 59 | AY, AZ, BY, BZ, CY... (C, o, D, p, E...) | water | water | 18.0 | 422 | Chemie (HOH) |
Sequence modifications
1: 1 - 2903 (GenBank: 1914786293)
| PDB | External Database | Details |
|---|---|---|
| C 747 | U 2721796 | conflict |
| G 1847 | A 2720696 | conflict |
| A 2069 | G 2720474 | conflict |
| U 2104 | C 2720439 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 56 |
| Total formula weight | 2214308.7 | |
| Non-Polymers* | Number of molecules | 587 |
| Total formula weight | 14389.9 | |
| All* | Total formula weight | 2228698.6 |
