8VV4
E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (B) | 50S ribosomal protein L2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) | Escherichia coli | Large ribosomal subunit protein uL2 |
| 2 | B (C) | Large ribosomal subunit protein uL3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) | Escherichia coli | 50S ribosomal protein L3 |
| 3 | C (D) | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (A1AGK6) Pfam (PF00573) | Escherichia coli | |
| 4 | D (E) | Large ribosomal subunit protein uL5 | polymer | 179 | 20333.6 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) | Escherichia coli | 50S ribosomal protein L5 |
| 5 | E (F) | Large ribosomal subunit protein uL6 | polymer | 177 | 18932.8 | 1 | UniProt (P0AG55) Pfam (PF00347) | Escherichia coli | 50S ribosomal protein L6 |
| 6 | F (G) | Large ribosomal subunit protein bL9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF03948) Pfam (PF01281) | Escherichia coli | 50S ribosomal protein L9 |
| 7 | G (J) | Large ribosomal subunit protein uL13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA12) Pfam (PF00572) | Escherichia coli | |
| 8 | H (K) | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (S1NW45) | Escherichia coli | |
| 9 | I (L) | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (A0A037Y8L6) | Escherichia coli | |
| 10 | J (M) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) | Escherichia coli | Large ribosomal subunit protein uL16 |
| 11 | K (N) | Large ribosomal subunit protein bL17 | polymer | 127 | 14393.7 | 1 | UniProt (P0AG44) Pfam (PF01196) | Escherichia coli | 50S ribosomal protein L17 |
| 12 | L (O) | Large ribosomal subunit protein uL18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) Pfam (PF00861) | Escherichia coli | 50S ribosomal protein L18 |
| 13 | M (P) | Large ribosomal subunit protein bL19 | polymer | 115 | 13159.3 | 1 | UniProt (P0A7K8) Pfam (PF01245) | Escherichia coli | |
| 14 | N (Q) | 50S ribosomal protein L20 | polymer | 118 | 13528.0 | 1 | UniProt (B7MAS6) Pfam (PF00453) | Escherichia coli | |
| 15 | O (R) | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (C3SSG2) | Escherichia coli | |
| 16 | P (S) | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) | Escherichia coli | Large ribosomal subunit protein uL22 |
| 17 | Q (T) | 50S ribosomal protein L23 | polymer | 100 | 11222.2 | 1 | UniProt (C3SQV2) | Escherichia coli | |
| 18 | R (U) | 50S ribosomal protein L24 | polymer | 104 | 11339.3 | 1 | UniProt (C3SQZ7) | Escherichia coli | |
| 19 | S (V) | Large ribosomal subunit protein bL25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) | Escherichia coli | |
| 20 | T (W) | Large ribosomal subunit protein bL27 | polymer | 84 | 9015.3 | 1 | UniProt (C3SSG7) | Escherichia coli | |
| 21 | U (X) | 50S ribosomal protein L28 | polymer | 78 | 9027.6 | 1 | UniProt (A0A1X3JA73) | Escherichia coli | |
| 22 | V (Y) | Large ribosomal subunit protein uL29 | polymer | 63 | 7286.5 | 1 | UniProt (P0A7M6) Pfam (PF00831) | Escherichia coli | 50S ribosomal protein L29 |
| 23 | W (Z) | 50S ribosomal protein L30 | polymer | 59 | 6554.8 | 1 | UniProt (C3SR32) | Escherichia coli | |
| 24 | X (1) | 23S ribosomal RNA | polymer | 2904 | 941611.4 | 1 | GenBank (2327815913) | Escherichia coli | |
| 25 | Y (2) | 16S ribosomal RNA | polymer | 1540 | 499238.0 | 1 | GenBank (1388194076) | Escherichia coli | |
| 26 | Z (3) | 5S ribosomal RNA | polymer | 120 | 38790.1 | 1 | GenBank (1273279017) | Escherichia coli | |
| 27 | AA (4) | mRNA | polymer | 18 | 5700.5 | 1 | Escherichia coli | ||
| 28 | BA (5) | tRNA^ProL (GGG) | polymer | 77 | 24876.8 | 1 | GenBank (1847051788) | Escherichia coli | |
| 29 | CA (a) | 50S ribosomal protein L31 | polymer | 70 | 7887.1 | 1 | UniProt (P0A7M9) Pfam (PF01197) | Escherichia coli | Large ribosomal subunit protein bL31-A |
| 30 | DA (b) | 50S ribosomal protein L32 | polymer | 57 | 6463.4 | 1 | UniProt (C3TE02) | Escherichia coli | |
| 31 | EA (c) | Large ribosomal subunit protein bL33 | polymer | 55 | 6388.6 | 1 | UniProt (C3SME7) | Escherichia coli | |
| 32 | FA (d) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (B7MGC4) Pfam (PF00468) | Escherichia coli | |
| 33 | GA (e) | 50S ribosomal protein L35 | polymer | 65 | 7313.0 | 1 | UniProt (P0A7Q1) Pfam (PF01632) | Escherichia coli | Large ribosomal subunit protein bL35,Ribosomal protein A |
| 34 | HA (f) | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (A0A0E2L017) | Escherichia coli | |
| 35 | IA (g) | 30S ribosomal protein S2 | polymer | 241 | 26781.7 | 1 | UniProt (C3TPN2) | Escherichia coli | |
| 36 | JA (h) | 30S ribosomal protein S3 | polymer | 233 | 26031.3 | 1 | UniProt (B7MCS9) Pfam (PF07650) Pfam (PF00189) | Escherichia coli | |
| 37 | KA (i) | 30S ribosomal protein S4 | polymer | 206 | 23514.2 | 1 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) | Escherichia coli | |
| 38 | LA (j) | 30S ribosomal protein S5 | polymer | 167 | 17629.4 | 1 | UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) | Escherichia coli | |
| 39 | MA (k) | 30S ribosomal protein S6 | polymer | 135 | 15727.5 | 1 | UniProt (P02358) Pfam (PF01250) | Escherichia coli | Small ribosomal subunit protein bS6 |
| 40 | NA (l) | 30S ribosomal protein S7 | polymer | 179 | 20055.2 | 1 | UniProt (P02359) Pfam (PF00177) | Escherichia coli | Small ribosomal subunit protein uS7 |
| 41 | OA (m) | Small ribosomal subunit protein uS8 | polymer | 130 | 14146.6 | 1 | UniProt (C3SR12) | Escherichia coli | |
| 42 | PA (n) | Small ribosomal subunit protein uS9 | polymer | 130 | 14886.3 | 1 | UniProt (C3SRY2) | Escherichia coli | |
| 43 | QA (o) | Small ribosomal subunit protein uS10 | polymer | 103 | 11755.6 | 1 | UniProt (C3SQT7) | Escherichia coli | |
| 44 | RA (p) | 30S ribosomal protein S11 | polymer | 129 | 13871.0 | 1 | UniProt (B7MCR3) Pfam (PF00411) | Escherichia coli | |
| 45 | SA (q) | Small ribosomal subunit protein uS12 | polymer | 124 | 13814.2 | 1 | UniProt (C3SQR7) | Escherichia coli | |
| 46 | TA (r) | 30S ribosomal protein S13 | polymer | 118 | 13128.5 | 1 | UniProt (A0A7U9IV78) | Escherichia coli | |
| 47 | UA (s) | Small ribosomal subunit protein uS14 | polymer | 101 | 11606.6 | 1 | UniProt (A0A2X1PQW4) | Escherichia coli | |
| 48 | VA (t) | Small ribosomal subunit protein uS15 | polymer | 89 | 10290.8 | 1 | UniProt (C3SSQ7) | Escherichia coli | |
| 49 | WA (u) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (C3SYP2) | Escherichia coli | |
| 50 | XA (v) | Small ribosomal subunit protein uS17 | polymer | 84 | 9724.5 | 1 | UniProt (C3SQY7) | Escherichia coli | |
| 51 | YA (w) | 30S ribosomal protein S18 | polymer | 75 | 9005.5 | 1 | UniProt (A0A0E2KXL3) | Escherichia coli | |
| 52 | ZA (x) | Small ribosomal subunit protein uS19 | polymer | 92 | 10455.4 | 1 | UniProt (C3SQW2) | Escherichia coli | |
| 53 | AB (y) | 30S ribosomal protein S20 | polymer | 87 | 9708.5 | 1 | UniProt (C3TRH7) | Escherichia coli | |
| 54 | BB (z) | 30S ribosomal protein S21 | polymer | 71 | 8524.0 | 1 | UniProt (A0A0E2L2J1) | Escherichia coli | |
| 55 | AC, AD, AE, AF, AG... (1, 2, 3, B, C...) | MAGNESIUM ION | non-polymer | 24.3 | 424 | Chemie (MG) PubChem (888) | |||
| 56 | XM (1) | LYSINE | non-polymer | 147.2 | 1 | Chemie (LYS) PubChem (641599) | |||
| 57 | AS, AT, BS, BT, CS... (U, u, V, v, W...) | water | water | 18.0 | 560 | Chemie (HOH) |
Sequence modifications
1: 1 - 2904 (GenBank: 2327815913)
| PDB | External Database | Details |
|---|---|---|
| C 747 | U 3146525 | conflict |
| G 1847 | A 3145425 | conflict |
| A 2069 | G 3145203 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 54 |
| Total formula weight | 2170097.0 | |
| Non-Polymers* | Number of molecules | 425 |
| Total formula weight | 10452.5 | |
| All* | Total formula weight | 2180549.5 |
