8VT3
cryo-EM structure of HMPV (MPV-2cREKR)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Prefusion of HMPV (MPV-2cREKR), N-fragment | polymer | 75 | 8296.2 | 3 | UniProt (Q6WB98) | Human metapneumovirus | |
| 2 | D, E, F (G, H, I) | Prefusion of HMPV (MPV-2cREKR), C-fragment | polymer | 385 | 41865.8 | 3 | UniProt (Q6WB98) Pfam (PF00523) | Human metapneumovirus | |
| 3 | G, I, K (D, F, K) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
| 4 | H, J, L (E, J, L) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
| 5 | M, N, O (G, H, I) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) |
Sequence modifications
G, H, I: 103 - 487 (UniProt: Q6WB98)
| PDB | External Database | Details |
|---|---|---|
| Arg 112 | Val 112 | conflict |
| Glu 209 | Asp 209 | conflict |
| Ile 231 | Val 231 | conflict |
| Glu 294 | Gly 294 | conflict |
| Asn 368 | His 368 | conflict |
| Pro 453 | Glu 453 | conflict |
| Trp 473 | Leu 473 | conflict |
| Arg 475 | Asp 475 | conflict |
| Lys 476 | Gln 476 | conflict |
| Phe 477 | Ser 477 | conflict |
| Asp 478 | Asn 478 | conflict |
| Glu 479 | Arg 479 | conflict |
| Ile 484 | Ala 484 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 150486.2 | |
| Branched | Number of molecules | 6 |
| Total formula weight | 3032.8 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 663.6 | |
| All* | Total formula weight | 154182.7 |
