8VSP
Cryo-EM structure of human invariant chain in complex with HLA-DQ
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, D, G | HLA class II histocompatibility antigen, DQ alpha 1 chain | polymer | 288 | 31599.9 | 3 | UniProt (P01909) Pfam (PF00993) Pfam (PF07654) In PDB | Homo sapiens (human) | DC-1 alpha chain,DC-alpha,HLA-DCA,MHC class II DQA1 |
2 | B, E, H | HLA class II histocompatibility antigen, DQ beta 1 chain | polymer | 295 | 33798.3 | 3 | UniProt (P01920) Pfam (PF00969) Pfam (PF07654) In PDB | Homo sapiens (human) | MHC class II antigen DQB1 |
3 | C, F, I | HLA class II histocompatibility antigen gamma chain | polymer | 308 | 34901.9 | 3 | UniProt (P04233) Pfam (PF09307) Pfam (PF08831) Pfam (PF00086) In PDB | Homo sapiens (human) | HLA-DR antigens-associated invariant chain,Ia antigen-associated invariant chain,Ii |
4 | A, D, G | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) |
Sequence modifications
A, D, G: -22 - 231 (UniProt: P01909)
B, E, H: -31 - 229 (UniProt: P01920)
C, F, I: 2 - 296 (UniProt: P04233)
PDB | External Database | Details |
---|---|---|
Ala 232 | - | expression tag |
Ala 233 | - | expression tag |
Ala 234 | - | expression tag |
Leu 235 | - | expression tag |
Glu 236 | - | expression tag |
Val 237 | - | expression tag |
Leu 238 | - | expression tag |
Phe 239 | - | expression tag |
Gln 240 | - | expression tag |
Gly 241 | - | expression tag |
Pro 242 | - | expression tag |
Gly 243 | - | expression tag |
Ala 244 | - | expression tag |
Ala 245 | - | expression tag |
Glu 246 | - | expression tag |
Asp 247 | - | expression tag |
Gln 248 | - | expression tag |
Val 249 | - | expression tag |
Asp 250 | - | expression tag |
Pro 251 | - | expression tag |
Arg 252 | - | expression tag |
Leu 253 | - | expression tag |
Ile 254 | - | expression tag |
Asp 255 | - | expression tag |
Gly 256 | - | expression tag |
Lys 257 | - | expression tag |
His 258 | - | expression tag |
His 259 | - | expression tag |
His 260 | - | expression tag |
His 261 | - | expression tag |
His 262 | - | expression tag |
His 263 | - | expression tag |
His 264 | - | expression tag |
His 265 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ala 230 | - | expression tag |
Ala 231 | - | expression tag |
Ala 232 | - | expression tag |
Leu 233 | - | expression tag |
Glu 234 | - | expression tag |
Val 235 | - | expression tag |
Leu 236 | - | expression tag |
Phe 237 | - | expression tag |
Gln 238 | - | expression tag |
Gly 239 | - | expression tag |
Pro 240 | - | expression tag |
Gly 241 | - | expression tag |
Ala 242 | - | expression tag |
Ala 243 | - | expression tag |
Glu 244 | - | expression tag |
Asp 245 | - | expression tag |
Gln 246 | - | expression tag |
Val 247 | - | expression tag |
Asp 248 | - | expression tag |
Pro 249 | - | expression tag |
Arg 250 | - | expression tag |
Leu 251 | - | expression tag |
Ile 252 | - | expression tag |
Asp 253 | - | expression tag |
Gly 254 | - | expression tag |
Lys 255 | - | expression tag |
His 256 | - | expression tag |
His 257 | - | expression tag |
His 258 | - | expression tag |
His 259 | - | expression tag |
His 260 | - | expression tag |
His 261 | - | expression tag |
His 262 | - | expression tag |
His 263 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met -11 | - | initiating methionine |
Asp -10 | - | expression tag |
Tyr -9 | - | expression tag |
Lys -8 | - | expression tag |
Asp -7 | - | expression tag |
Asp -6 | - | expression tag |
Asp -5 | - | expression tag |
Asp -4 | - | expression tag |
Ala -3 | - | expression tag |
Gly -2 | - | expression tag |
Thr -1 | - | expression tag |
Ser 0 | - | expression tag |
Arg 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 9 |
Total formula weight | 300900.5 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 663.6 | |
All* | Total formula weight | 301564.1 |