8VS9
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (16S) | 16S ribosomal RNA | polymer | 1539 | 498725.4 | 1 | GenBank (1338015391) | Escherichia coli | |
| 2 | B (23S) | 23S ribosomal RNA | polymer | 2903 | 941305.3 | 1 | GenBank (1036415628) | Escherichia coli | |
| 3 | C (5S) | 5S ribosomal RNA | polymer | 120 | 38813.1 | 1 | GenBank (1370526515) | Escherichia coli | |
| 4 | D (ATRN) | A-tRNA | polymer | 76 | 24476.5 | 1 | GenBank (1845258627) | Escherichia coli | |
| 5 | E (ETRN) | E-tRNA | polymer | 77 | 24802.8 | 1 | GenBank (1848934315) | Escherichia coli | |
| 6 | F (L02) | 50S ribosomal protein L2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) | Escherichia coli | Large ribosomal subunit protein uL2 |
| 7 | G (L03) | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) | Escherichia coli | Large ribosomal subunit protein uL3 |
| 8 | H (L04) | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (A1AGK6) Pfam (PF00573) UniProt (by SIFTS) (P60723) | Escherichia coli | |
| 9 | I (L05) | 50S ribosomal protein L5 | polymer | 179 | 20333.6 | 1 | UniProt (A0A140N5A3) Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (P62399) | Escherichia coli | |
| 10 | J (L06) | 50S ribosomal protein L6 | polymer | 177 | 18932.8 | 1 | UniProt (C3SR17) Pfam (PF00347) UniProt (by SIFTS) (P0AG55) | Escherichia coli | |
| 11 | K (L09) | Large ribosomal subunit protein bL9 | polymer | 149 | 15789.0 | 1 | UniProt (C3SFP2) Pfam (PF03948) Pfam (PF01281) UniProt (by SIFTS) (P0A7R1) | Escherichia coli | |
| 12 | L (L1) | 50S ribosomal protein L1 | polymer | 234 | 24765.7 | 1 | UniProt (B7MIX0) Pfam (PF00687) UniProt (by SIFTS) (P0A7L0) | Escherichia coli | |
| 13 | M (L10) | 50S ribosomal protein L10 | polymer | 165 | 17736.6 | 1 | UniProt (P0A7J3) Pfam (PF00466) | Escherichia coli | 50S ribosomal protein L8,Large ribosomal subunit protein uL10 |
| 14 | N (L11) | 50S ribosomal protein L11 | polymer | 142 | 14894.4 | 1 | UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298) | Escherichia coli | Large ribosomal subunit protein uL11 |
| 15 | O (L13) | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (S1EW51) Pfam (PF00572) UniProt (by SIFTS) (P0AA10) | Escherichia coli | |
| 16 | P (L14) | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (S1NW45) Pfam (PF00238) UniProt (by SIFTS) (P0ADY3) | Escherichia coli | |
| 17 | Q (L15) | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (A0A037Y8L6) Pfam (PF00828) UniProt (by SIFTS) (P02413) | Escherichia coli | |
| 18 | R (L16) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) | Escherichia coli | Large ribosomal subunit protein uL16 |
| 19 | S (L17) | Large ribosomal subunit protein bL17 | polymer | 127 | 14393.7 | 1 | UniProt (C3SR72) Pfam (PF01196) UniProt (by SIFTS) (P0AG44) | Escherichia coli | |
| 20 | T (L18) | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (S1E9N8) Pfam (PF00861) UniProt (by SIFTS) (P0C018) | Escherichia coli | |
| 21 | U (L19) | 50S ribosomal protein L19 | polymer | 115 | 13159.3 | 1 | UniProt (V0AJX1) Pfam (PF01245) UniProt (by SIFTS) (P0A7K6) | Escherichia coli | |
| 22 | V (L20) | 50S ribosomal protein L20 | polymer | 118 | 13528.0 | 1 | UniProt (B7MAS6) Pfam (PF00453) UniProt (by SIFTS) (P0A7L3) | Escherichia coli | |
| 23 | W (L21) | Ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (C3SSG2) Pfam (PF00829) UniProt (by SIFTS) (P0AG48) | Escherichia coli | |
| 24 | X (L22) | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) | Escherichia coli | Large ribosomal subunit protein uL22 |
| 25 | Y (L23) | 50S ribosomal protein L23 | polymer | 100 | 11222.2 | 1 | UniProt (U9Y6C4) Pfam (PF00276) UniProt (by SIFTS) (P0ADZ0) | Escherichia coli | |
| 26 | Z (L24) | 50S ribosomal protein L24 | polymer | 104 | 11339.3 | 1 | UniProt (A0A1X3KWX7) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (P60624) | Escherichia coli | |
| 27 | AA (L25) | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (D7XH79) Pfam (PF01386) UniProt (by SIFTS) (P68919) | Escherichia coli | |
| 28 | BA (L27) | 50S ribosomal protein L27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) | Escherichia coli | Large ribosomal subunit protein bL27 |
| 29 | CA (L28) | 50S ribosomal protein L28 | polymer | 78 | 9027.6 | 1 | UniProt (A0A1X3JA73) Pfam (PF00830) UniProt (by SIFTS) (P0A7M2) | Escherichia coli | |
| 30 | DA (L29) | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (D6IEL0) Pfam (PF00831) UniProt (by SIFTS) (P0A7M6) | Escherichia coli | |
| 31 | EA (L30) | Large ribosomal subunit protein uL30 | polymer | 59 | 6554.8 | 1 | UniProt (C3SR32) Pfam (PF00327) UniProt (by SIFTS) (P0AG51) | Escherichia coli | |
| 32 | FA (L31) | Large ribosomal subunit protein bL31 | polymer | 45 | 5093.9 | 1 | UniProt (C3SIV2) Pfam (PF01197) UniProt (by SIFTS) (P0A7M9) | Escherichia coli | |
| 33 | GA (L32) | 50S ribosomal protein L32 | polymer | 57 | 6463.4 | 1 | UniProt (D7XI28) Pfam (PF01783) UniProt (by SIFTS) (P0A7N4) | Escherichia coli | |
| 34 | HA (L33) | Large ribosomal subunit protein bL33 | polymer | 55 | 6388.6 | 1 | UniProt (C3SME7) Pfam (PF00471) UniProt (by SIFTS) (P0A7N9) | Escherichia coli | |
| 35 | IA (L34) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (B7MGC4) Pfam (PF00468) UniProt (by SIFTS) (P0A7P5) | Escherichia coli | |
| 36 | JA (L35) | 50S ribosomal protein L35 | polymer | 65 | 7313.0 | 1 | UniProt (P0A7Q1) Pfam (PF01632) | Escherichia coli | Large ribosomal subunit protein bL35,Ribosomal protein A |
| 37 | KA (L36) | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (A0A0E2L017) Pfam (PF00444) UniProt (by SIFTS) (P0A7Q6) | Escherichia coli | |
| 38 | LA (S02) | 30S ribosomal protein S2 | polymer | 241 | 26781.7 | 1 | UniProt (C3TPN2) Pfam (PF00318) UniProt (by SIFTS) (P0A7V0) | Escherichia coli | |
| 39 | MA (S03) | 30S ribosomal protein S3 | polymer | 233 | 26031.3 | 1 | UniProt (B7MCS9) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P0A7V3) | Escherichia coli | |
| 40 | NA (S04) | 30S ribosomal protein S4 | polymer | 206 | 23514.2 | 1 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) | Escherichia coli | |
| 41 | OA (S05) | 30S ribosomal protein S5 | polymer | 167 | 17629.4 | 1 | UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) | Escherichia coli | |
| 42 | PA (S06) | 30S ribosomal protein S6 | polymer | 135 | 15727.5 | 1 | UniProt (P02358) Pfam (PF01250) | Escherichia coli | Small ribosomal subunit protein bS6 |
| 43 | QA (S07) | 30S ribosomal protein S7 | polymer | 179 | 20055.2 | 1 | UniProt (P02359) Pfam (PF00177) | Escherichia coli | Small ribosomal subunit protein uS7 |
| 44 | RA (S08) | 30S ribosomal protein S8 | polymer | 130 | 14146.6 | 1 | UniProt (D7XKZ3) Pfam (PF00410) UniProt (by SIFTS) (P0A7W7) | Escherichia coli | |
| 45 | SA (S09) | Small ribosomal subunit protein uS9 | polymer | 130 | 14886.3 | 1 | UniProt (C3SRY2) Pfam (PF00380) UniProt (by SIFTS) (P0A7X3) | Escherichia coli | |
| 46 | TA (S10) | 30S ribosomal protein S10 | polymer | 103 | 11755.6 | 1 | UniProt (V0ANK5) Pfam (PF00338) UniProt (by SIFTS) (P0A7R5) | Escherichia coli | |
| 47 | UA (S11) | 30S ribosomal protein S11 | polymer | 129 | 13871.0 | 1 | UniProt (B7MCR3) Pfam (PF00411) UniProt (by SIFTS) (P0A7R9) | Escherichia coli | |
| 48 | VA (S12) | 30S ribosomal protein S12 | polymer | 124 | 13768.2 | 1 | UniProt (P0A7S3) Pfam (PF00164) | Escherichia coli | |
| 49 | WA (S13) | 30S ribosomal protein S13 | polymer | 118 | 13128.5 | 1 | UniProt (A0A7U9IV78) Pfam (PF00416) UniProt (by SIFTS) (P0A7S9) | Escherichia coli | |
| 50 | XA (S14) | Small ribosomal subunit protein uS14 | polymer | 101 | 11606.6 | 1 | UniProt (A0A2X1PQW4) Pfam (PF00253) UniProt (by SIFTS) (P0AG59) | Escherichia coli | |
| 51 | YA (S15) | Small ribosomal subunit protein uS15 | polymer | 89 | 10290.8 | 1 | UniProt (C3SSQ7) Pfam (PF00312) UniProt (by SIFTS) (P0ADZ4) | Escherichia coli | |
| 52 | ZA (S16) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (C3SYP2) Pfam (PF00886) UniProt (by SIFTS) (P0A7T3) | Escherichia coli | |
| 53 | AB (S17) | Small ribosomal subunit protein uS17 | polymer | 84 | 9724.5 | 1 | UniProt (C3SQY7) Pfam (PF00366) UniProt (by SIFTS) (P0AG63) | Escherichia coli | |
| 54 | BB (S18) | 30S ribosomal protein S18 | polymer | 75 | 9005.5 | 1 | UniProt (A0A0E2KXL3) Pfam (PF01084) UniProt (by SIFTS) (P0A7T7) | Escherichia coli | |
| 55 | CB (S19) | 30S ribosomal protein S19 | polymer | 92 | 10455.4 | 1 | UniProt (S1EA57) Pfam (PF00203) UniProt (by SIFTS) (P0A7U3) | Escherichia coli | |
| 56 | DB (S20) | 30S ribosomal protein S20 | polymer | 87 | 9708.5 | 1 | UniProt (C3TRH7) Pfam (PF01649) UniProt (by SIFTS) (P0A7U7) | Escherichia coli | |
| 57 | EB (S21) | 30S ribosomal protein S21 | polymer | 71 | 8524.0 | 1 | UniProt (A0A0E2L2J1) Pfam (PF01165) UniProt (by SIFTS) (P68679) | Escherichia coli | |
| 58 | FB (SMPB) | SsrA-binding protein | polymer | 150 | 17192.8 | 1 | UniProt (A0A2X1N680) Pfam (PF01668) UniProt (by SIFTS) (P0A832) | Escherichia coli | Small protein B |
| 59 | GB (TMRN) | TMRN | polymer | 363 | 117198.3 | 1 | GenBank (1741105611) | Escherichia coli |
Sequence modifications
23S: 1 - 2903 (GenBank: 1036415628)
5S: 1 - 120 (GenBank: 1370526515)
| PDB | External Database | Details |
|---|---|---|
| C 747 | U 1155325 | variant |
| PDB | External Database | Details |
|---|---|---|
| A 120 | U 2744652 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 59 |
| Total formula weight | 2377082.9 | |
| All* | Total formula weight | 2377082.9 |
