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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8VS9

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
116S16S ribosomal RNApolymer1539498725.41GenBank (1338015391)Escherichia coli
223S23S ribosomal RNApolymer2903941305.31GenBank (1036415628)Escherichia coli
35S5S ribosomal RNApolymer12038813.11GenBank (1370526515)Escherichia coli
4ATRNA-tRNApolymer7624476.51GenBank (1845258627)Escherichia coli
5ETRNE-tRNApolymer7724802.81GenBank (1848934315)Escherichia coli
6L0250S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliLarge ribosomal subunit protein uL2
7L0350S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coliLarge ribosomal subunit protein uL3
8L0450S ribosomal protein L4polymer20122121.61UniProt (A1AGK6)
Pfam (PF00573)
In PDB		Escherichia coli
9L0550S ribosomal protein L5polymer17920333.61UniProt (A0A140N5A3)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli
10L0650S ribosomal protein L6polymer17718932.81UniProt (C3SR17)
Pfam (PF00347)
In PDB		Escherichia coli
11L09Large ribosomal subunit protein bL9polymer14915789.01UniProt (C3SFP2)
Pfam (PF03948)
Pfam (PF01281)
In PDB		Escherichia coli
12L150S ribosomal protein L1polymer23424765.71UniProt (B7MIX0)
Pfam (PF00687)
In PDB		Escherichia coli
13L1050S ribosomal protein L10polymer16517736.61UniProt (P0A7J3)
Pfam (PF00466)
In PDB		Escherichia coli50S ribosomal protein L8,Large ribosomal subunit protein uL10
14L1150S ribosomal protein L11polymer14214894.41UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coliLarge ribosomal subunit protein uL11
15L1350S ribosomal protein L13polymer14216050.61UniProt (S1EW51)
In PDB		Escherichia coli
16L1450S ribosomal protein L14polymer12313565.11UniProt (S1NW45)
Pfam (PF00238)
In PDB		Escherichia coli
17L1550S ribosomal protein L15polymer14415008.51UniProt (A0A037Y8L6)
Pfam (PF00828)
In PDB		Escherichia coli
18L1650S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coliLarge ribosomal subunit protein uL16
19L17Large ribosomal subunit protein bL17polymer12714393.71UniProt (C3SR72)
Pfam (PF01196)
In PDB		Escherichia coli
20L1850S ribosomal protein L18polymer11712794.71UniProt (S1E9N8)
In PDB		Escherichia coli
21L1950S ribosomal protein L19polymer11513159.31UniProt (V0AJX1)
In PDB		Escherichia coli
22L2050S ribosomal protein L20polymer11813528.01UniProt (B7MAS6)
Pfam (PF00453)
In PDB		Escherichia coli
23L21Ribosomal protein L21polymer10311586.41UniProt (C3SSG2)
Pfam (PF00829)
In PDB		Escherichia coli
24L2250S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coliLarge ribosomal subunit protein uL22
25L2350S ribosomal protein L23polymer10011222.21UniProt (U9Y6C4)
In PDB		Escherichia coli
26L2450S ribosomal protein L24polymer10411339.31UniProt (A0A1X3KWX7)
In PDB		Escherichia coli
27L2550S ribosomal protein L25polymer9410713.51UniProt (D7XH79)
In PDB		Escherichia coli
28L2750S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coliLarge ribosomal subunit protein bL27
29L2850S ribosomal protein L28polymer789027.61UniProt (A0A1X3JA73)
Pfam (PF00830)
In PDB		Escherichia coli
30L2950S ribosomal protein L29polymer637286.51UniProt (D6IEL0)
In PDB		Escherichia coli
31L30Large ribosomal subunit protein uL30polymer596554.81UniProt (C3SR32)
Pfam (PF00327)
In PDB		Escherichia coli
32L31Large ribosomal subunit protein bL31polymer455093.91UniProt (C3SIV2)
Pfam (PF01197)
In PDB		Escherichia coli
33L3250S ribosomal protein L32polymer576463.41UniProt (D7XI28)
In PDB		Escherichia coli
34L33Large ribosomal subunit protein bL33polymer556388.61UniProt (C3SME7)
Pfam (PF00471)
In PDB		Escherichia coli
35L3450S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
Pfam (PF00468)
In PDB		Escherichia coli
36L3550S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliLarge ribosomal subunit protein bL35,Ribosomal protein A
37L3650S ribosomal protein L36polymer384377.41UniProt (A0A0E2L017)
Pfam (PF00444)
In PDB		Escherichia coli
38S0230S ribosomal protein S2polymer24126781.71UniProt (C3TPN2)
Pfam (PF00318)
In PDB		Escherichia coli
39S0330S ribosomal protein S3polymer23326031.31UniProt (B7MCS9)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli
40S0430S ribosomal protein S4polymer20623514.21UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli
41S0530S ribosomal protein S5polymer16717629.41UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli
42S0630S ribosomal protein S6polymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coliSmall ribosomal subunit protein bS6
43S0730S ribosomal protein S7polymer17920055.21UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coliSmall ribosomal subunit protein uS7
44S0830S ribosomal protein S8polymer13014146.61UniProt (D7XKZ3)
In PDB		Escherichia coli
45S09Small ribosomal subunit protein uS9polymer13014886.31UniProt (C3SRY2)
Pfam (PF00380)
In PDB		Escherichia coli
46S1030S ribosomal protein S10polymer10311755.61UniProt (V0ANK5)
In PDB		Escherichia coli
47S1130S ribosomal protein S11polymer12913871.01UniProt (B7MCR3)
Pfam (PF00411)
In PDB		Escherichia coli
48S1230S ribosomal protein S12polymer12413768.21UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli
49S1330S ribosomal protein S13polymer11813128.51UniProt (A0A7U9IV78)
Pfam (PF00416)
In PDB		Escherichia coli
50S14Small ribosomal subunit protein uS14polymer10111606.61UniProt (A0A2X1PQW4)
Pfam (PF00253)
In PDB		Escherichia coli
51S15Small ribosomal subunit protein uS15polymer8910290.81UniProt (C3SSQ7)
Pfam (PF00312)
In PDB		Escherichia coli
52S1630S ribosomal protein S16polymer829207.61UniProt (C3SYP2)
Pfam (PF00886)
In PDB		Escherichia coli
53S17Small ribosomal subunit protein uS17polymer849724.51UniProt (C3SQY7)
Pfam (PF00366)
In PDB		Escherichia coli
54S1830S ribosomal protein S18polymer759005.51UniProt (A0A0E2KXL3)
Pfam (PF01084)
In PDB		Escherichia coli
55S1930S ribosomal protein S19polymer9210455.41UniProt (S1EA57)
In PDB		Escherichia coli
56S2030S ribosomal protein S20polymer879708.51UniProt (C3TRH7)
Pfam (PF01649)
In PDB		Escherichia coli
57S2130S ribosomal protein S21polymer718524.01UniProt (A0A0E2L2J1)
Pfam (PF01165)
In PDB		Escherichia coli
58SMPBSsrA-binding proteinpolymer15017192.81UniProt (A0A2X1N680)
Pfam (PF01668)
In PDB		Escherichia coliSmall protein B
59TMRNTMRNpolymer363117198.31GenBank (1741105611)Escherichia coli
Sequence modifications
23S: 1 - 2903 (GenBank: 1036415628)
PDBExternal DatabaseDetails
C 747U 1155325variant
5S: 1 - 120 (GenBank: 1370526515)
PDBExternal DatabaseDetails
A 120U 2744652conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains59
Total formula weight2377082.9
All*Total formula weight2377082.9
*Water molecules are not included.

223790

PDB entries from 2024-08-14

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