8VQ9
Prefusion stabilized structure of the SARS-CoV-2 fusion machinery
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike protein S2 | polymer | 624 | 68224.2 | 3 | UniProt (P0DTC2) In PDB | Sarbecovirus | |
2 | D, E, F, G, H... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 9 | In PDB GlyTouCan (G42666HT) | |||
3 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 9 | Chemie (NAG) |
Sequence modifications
A, B, C: 686 - 1208 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Met 654 | - | initiating methionine |
Gly 655 | - | expression tag |
Ile 656 | - | expression tag |
Leu 657 | - | expression tag |
Pro 658 | - | expression tag |
Ser 659 | - | expression tag |
Pro 660 | - | expression tag |
Gly 661 | - | expression tag |
Met 662 | - | expression tag |
Pro 663 | - | expression tag |
Ala 664 | - | expression tag |
Leu 665 | - | expression tag |
Leu 666 | - | expression tag |
Ser 667 | - | expression tag |
Leu 668 | - | expression tag |
Val 669 | - | expression tag |
Ser 670 | - | expression tag |
Leu 671 | - | expression tag |
Leu 672 | - | expression tag |
Ser 673 | - | expression tag |
Val 674 | - | expression tag |
Leu 675 | - | expression tag |
Leu 676 | - | expression tag |
Met 677 | - | expression tag |
Gly 678 | - | expression tag |
Cys 679 | - | expression tag |
Val 680 | - | expression tag |
Ala 681 | - | expression tag |
Glu 682 | - | expression tag |
Thr 683 | - | expression tag |
Gly 684 | - | expression tag |
Thr 685 | - | expression tag |
Cys 707 | Tyr 707 | conflict |
Cys 883 | Thr 883 | conflict |
Pro 892 | Ala 892 | conflict |
Pro 899 | Ala 899 | conflict |
Pro 942 | Ala 942 | conflict |
Phe 961 | Thr 961 | conflict |
Cys 970 | Phe 970 | conflict |
Pro 987 | Val 987 | conflict |
Cys 999 | Gly 999 | conflict |
Gly 1209 | - | expression tag |
Ser 1210 | - | expression tag |
Gly 1211 | - | expression tag |
Tyr 1212 | - | expression tag |
Ile 1213 | - | expression tag |
Pro 1214 | - | expression tag |
Glu 1215 | - | expression tag |
Ala 1216 | - | expression tag |
Pro 1217 | - | expression tag |
Arg 1218 | - | expression tag |
Asp 1219 | - | expression tag |
Gly 1220 | - | expression tag |
Gln 1221 | - | expression tag |
Ala 1222 | - | expression tag |
Tyr 1223 | - | expression tag |
Val 1224 | - | expression tag |
Arg 1225 | - | expression tag |
Lys 1226 | - | expression tag |
Asp 1227 | - | expression tag |
Gly 1228 | - | expression tag |
Glu 1229 | - | expression tag |
Trp 1230 | - | expression tag |
Val 1231 | - | expression tag |
Leu 1232 | - | expression tag |
Leu 1233 | - | expression tag |
Ser 1234 | - | expression tag |
Thr 1235 | - | expression tag |
Phe 1236 | - | expression tag |
Leu 1237 | - | expression tag |
Gly 1238 | - | expression tag |
Arg 1239 | - | expression tag |
Ser 1240 | - | expression tag |
Leu 1241 | - | expression tag |
Glu 1242 | - | expression tag |
Val 1243 | - | expression tag |
Leu 1244 | - | expression tag |
Phe 1245 | - | expression tag |
Gln 1246 | - | expression tag |
Gly 1247 | - | expression tag |
Pro 1248 | - | expression tag |
Gly 1249 | - | expression tag |
Ser 1250 | - | expression tag |
Gly 1251 | - | expression tag |
Gly 1252 | - | expression tag |
Leu 1253 | - | expression tag |
Asn 1254 | - | expression tag |
Asp 1255 | - | expression tag |
Ile 1256 | - | expression tag |
Phe 1257 | - | expression tag |
Glu 1258 | - | expression tag |
Ala 1259 | - | expression tag |
Gln 1260 | - | expression tag |
Lys 1261 | - | expression tag |
Ile 1262 | - | expression tag |
Glu 1263 | - | expression tag |
Trp 1264 | - | expression tag |
His 1265 | - | expression tag |
Glu 1266 | - | expression tag |
Gly 1267 | - | expression tag |
Ser 1268 | - | expression tag |
Gly 1269 | - | expression tag |
His 1270 | - | expression tag |
His 1271 | - | expression tag |
His 1272 | - | expression tag |
His 1273 | - | expression tag |
His 1274 | - | expression tag |
His 1275 | - | expression tag |
His 1276 | - | expression tag |
His 1277 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 204672.6 | |
Branched | Number of molecules | 9 |
Total formula weight | 3819.6 | |
Non-Polymers* | Number of molecules | 9 |
Total formula weight | 1990.9 | |
All* | Total formula weight | 210483.0 |