8VCQ
Crystal structure of the oligomeric rMcL-1 in complex with raffinose
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Galactose-binding lectin | polymer | 152 | 17225.7 | 8 | UniProt (A0A0P0E482) | Mytilus californianus (California mussel) | |
| 2 | AA, BA, CA, DA, EA... (c, d, e, f, g...) | alpha-D-galactopyranose-(1-6)-alpha-D-glucopyranose-(1-2)-beta-D-fructofuranose | branched | 504.4 | 26 | In PDB BIRD (PRD_900002) | |||
| 3 | IA, QA (A, G) | alpha-D-galactopyranose | non-polymer | 180.2 | 2 | Chemie (GLA) | |||
| 4 | JA, MA (D, F) | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | non-polymer | 238.3 | 2 | Chemie (EPE) | |||
| 5 | KA, OA (D, F) | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 2 | Chemie (PG4) | |||
| 6 | LA (D) | CALCIUM ION | non-polymer | 40.1 | 1 | Chemie (CA) | |||
| 7 | NA (F) | ACETATE ION | non-polymer | 59.0 | 1 | Chemie (ACT) | |||
| 8 | PA (F) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 9 | RA, SA, TA, UA, VA... (A, B, C, D, E...) | water | water | 18.0 | 356 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F, G, H: 1 - 150 (UniProt: A0A0P0E482)
| PDB | External Database | Details |
|---|---|---|
| Gly -1 | - | expression tag |
| His 0 | - | expression tag |
| Ile 107 | Val 107 | variant |
| Lys 130 | Gly 130 | variant |
| Asp 141 | Asn 141 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 137805.6 | |
| Branched | Number of molecules | 26 |
| Total formula weight | 13115.4 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 1416.6 | |
| All* | Total formula weight | 152337.6 |
