8V9L
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (a) | 16S Ribosomal RNA | polymer | 1528 | 495373.7 | 1 | GenBank (118168627) | Mycolicibacterium smegmatis MC2 155 | |
| 2 | B (b) | 30S Ribosomal Protein S2 | polymer | 277 | 30145.2 | 1 | UniProt (A0QVB8) Pfam (PF00318) | Mycolicibacterium smegmatis MC2 155 | Small ribosomal subunit protein uS2 |
| 3 | C (c) | 30S ribosomal protein S3 | polymer | 275 | 30191.2 | 1 | UniProt (A0QSD7) Pfam (PF07650) Pfam (PF00189) | Mycolicibacterium smegmatis MC2 155 | |
| 4 | D (d) | 30S ribosomal protein S4 | polymer | 201 | 23415.8 | 1 | UniProt (A0QSL7) Pfam (PF00163) Pfam (PF01479) | Mycolicibacterium smegmatis MC2 155 | |
| 5 | E (e) | Small ribosomal subunit protein uS5 | polymer | 214 | 21946.1 | 1 | UniProt (A0QSG6) Pfam (PF00333) Pfam (PF03719) | Mycolicibacterium smegmatis MC2 155 | |
| 6 | F (f) | 30S ribosomal protein S6 | polymer | 96 | 10991.6 | 1 | UniProt (A0A2U9Q0X2) Pfam (PF01250) UniProt (by SIFTS) (A0R7F9) | Mycolicibacterium smegmatis MC2 155 | |
| 7 | G (g) | 30S ribosomal protein S7 | polymer | 156 | 17660.4 | 1 | UniProt (A0QS97) Pfam (PF00177) | Mycolicibacterium smegmatis MC2 155 | |
| 8 | H (h) | Small ribosomal subunit protein uS8 | polymer | 132 | 14492.6 | 1 | UniProt (A0QSG3) Pfam (PF00410) | Mycolicibacterium smegmatis MC2 155 | |
| 9 | I (i) | 30S ribosomal protein S9 | polymer | 150 | 16794.4 | 1 | UniProt (A0QSP9) Pfam (PF00380) | Mycolicibacterium smegmatis MC2 155 | |
| 10 | J (j) | 30S ribosomal protein S10 | polymer | 101 | 11454.3 | 1 | UniProt (A0QSD0) Pfam (PF00338) | Mycolicibacterium smegmatis MC2 155 | |
| 11 | K (k) | 30S ribosomal protein S11 | polymer | 138 | 14671.8 | 1 | UniProt (A0QSL6) Pfam (PF00411) | Mycolicibacterium smegmatis MC2 155 | |
| 12 | L (l) | 30S ribosomal protein S12 | polymer | 124 | 13896.4 | 1 | UniProt (A0QS96) Pfam (PF00164) | Mycolicibacterium smegmatis MC2 155 | |
| 13 | M (m) | 30S ribosomal protein S13 | polymer | 124 | 14249.6 | 1 | UniProt (A0QSL5) Pfam (PF00416) | Mycolicibacterium smegmatis MC2 155 | |
| 14 | N (n) | Small ribosomal subunit protein uS14B | polymer | 61 | 6976.4 | 1 | UniProt (A0QSG2) Pfam (PF00253) | Mycolicibacterium smegmatis MC2 155 | |
| 15 | O (o) | Small ribosomal subunit protein uS15 | polymer | 89 | 10368.1 | 1 | UniProt (A0QVQ3) Pfam (PF00312) | Mycolicibacterium smegmatis MC2 155 | |
| 16 | P (p) | 30S ribosomal protein S16 | polymer | 156 | 16795.2 | 1 | UniProt (A0QV37) Pfam (PF00886) | Mycolicibacterium smegmatis MC2 155 | |
| 17 | Q (q) | 30S ribosomal protein S17 | polymer | 98 | 11127.0 | 1 | UniProt (A0QSE0) Pfam (PF00366) | Mycolicibacterium smegmatis MC2 155 | |
| 18 | R (r) | Small ribosomal subunit protein bS18B | polymer | 84 | 9524.2 | 1 | UniProt (A0R7F7) Pfam (PF01084) | Mycolicibacterium smegmatis MC2 155 | |
| 19 | S (s) | 30S ribosomal protein S19 | polymer | 93 | 10800.6 | 1 | UniProt (A0QSD5) Pfam (PF00203) | Mycolicibacterium smegmatis MC2 155 | |
| 20 | T (t) | 30S ribosomal protein S20 | polymer | 86 | 9556.1 | 1 | UniProt (A0R102) Pfam (PF01649) | Mycolicibacterium smegmatis MC2 155 | |
| 21 | U (u) | 30S Ribosomal Protein S22 | polymer | 33 | 4164.3 | 1 | Pfam (PF08213) UniProt (by SIFTS) (A0QR10) | Mycolicibacterium smegmatis MC2 155 | |
| 22 | V (v) | poly-U mRNA | polymer | 4 | 1179.7 | 1 | Mycolicibacterium smegmatis MC2 155 | ||
| 23 | W (x) | Elongation factor Tu | polymer | 396 | 43792.6 | 1 | UniProt (A0QS98) Pfam (PF00009) Pfam (PF03144) Pfam (PF03143) | Mycolicibacterium smegmatis MC2 155 | |
| 24 | X (y) | pe/E deacylated phenylanaline-tRNA | polymer | 76 | 24531.7 | 1 | Mycolicibacterium smegmatis MC2 155 | ||
| 25 | Y (z) | Ribosome hibernation factor Balon (MSMEG_1130) | polymer | 375 | 41390.7 | 1 | UniProt (A0QRI6) Pfam (PF18854) | Mycolicibacterium smegmatis MC2 155 | |
| 26 | Z (A) | 23S Ribosomal RNA | polymer | 3164 | 1026283.4 | 1 | GenBank (118168627) | Mycolicibacterium smegmatis MC2 155 | |
| 27 | AA (B) | 5S Ribosomal RNA | polymer | 118 | 38061.8 | 1 | GenBank (118168627) | Mycolicibacterium smegmatis MC2 155 | |
| 28 | BA (C) | 50S ribosomal protein L2 | polymer | 278 | 30425.9 | 1 | UniProt (A0QSD4) Pfam (PF03947) Pfam (PF00181) | Mycolicibacterium smegmatis MC2 155 | |
| 29 | CA (D) | 50S ribosomal protein L3 | polymer | 217 | 23011.4 | 1 | UniProt (A0QSD1) Pfam (PF00297) | Mycolicibacterium smegmatis MC2 155 | |
| 30 | DA (E) | Large ribosomal subunit protein uL4 | polymer | 215 | 22920.9 | 1 | UniProt (A0QSD2) Pfam (PF00573) | Mycolicibacterium smegmatis MC2 155 | |
| 31 | EA (F) | Large ribosomal subunit protein uL5 | polymer | 187 | 21152.3 | 1 | UniProt (A0QSG1) Pfam (PF00281) Pfam (PF00673) | Mycolicibacterium smegmatis MC2 155 | |
| 32 | FA (G) | 50S ribosomal protein L6 | polymer | 179 | 19483.4 | 1 | UniProt (A0QSG4) Pfam (PF00347) | Mycolicibacterium smegmatis MC2 155 | |
| 33 | GA (H) | 50S ribosomal protein L9 | polymer | 151 | 15949.3 | 1 | UniProt (A0R7F6) Pfam (PF01281) Pfam (PF03948) | Mycolicibacterium smegmatis MC2 155 | |
| 34 | HA (I) | 50S ribosomal protein L10 | polymer | 175 | 18035.7 | 1 | UniProt (A0QS62) Pfam (PF00466) | Mycolicibacterium smegmatis MC2 155 | |
| 35 | IA (J) | 50S ribosomal protein L11 | polymer | 142 | 15023.4 | 1 | UniProt (A0QS45) Pfam (PF03946) Pfam (PF00298) | Mycolicibacterium smegmatis MC2 155 | |
| 36 | JA (L) | Large ribosomal subunit protein uL13 | polymer | 147 | 16146.7 | 1 | UniProt (A0QSP8) Pfam (PF00572) | Mycolicibacterium smegmatis MC2 155 | |
| 37 | KA (M) | 50S ribosomal protein L14 | polymer | 122 | 13400.6 | 1 | UniProt (A0QSF9) Pfam (PF00238) | Mycolicibacterium smegmatis MC2 155 | |
| 38 | LA (N) | 50S ribosomal protein L15 | polymer | 147 | 15602.2 | 1 | UniProt (A0QSG8) Pfam (PF00828) | Mycolicibacterium smegmatis MC2 155 | |
| 39 | MA (O) | Large ribosomal subunit protein uL16 | polymer | 137 | 15627.1 | 1 | UniProt (A0QSD8) Pfam (PF00252) | Mycolicibacterium smegmatis MC2 155 | |
| 40 | NA (P) | 50S ribosomal protein L17 | polymer | 199 | 21892.2 | 1 | UniProt (A0QSL9) Pfam (PF01196) | Mycolicibacterium smegmatis MC2 155 | |
| 41 | OA (Q) | Large ribosomal subunit protein uL18 | polymer | 127 | 13711.7 | 1 | UniProt (I7FGD9) Pfam (PF00861) UniProt (by SIFTS) (A0QSG5) | Mycolicibacterium smegmatis MC2 155 | |
| 42 | PA (R) | 50S ribosomal protein L19 | polymer | 113 | 12892.8 | 1 | UniProt (A0QV42) Pfam (PF01245) | Mycolicibacterium smegmatis MC2 155 | |
| 43 | QA (S) | Large ribosomal subunit protein bL20 | polymer | 129 | 14494.7 | 1 | UniProt (A0QYU6) Pfam (PF00453) | Mycolicibacterium smegmatis MC2 155 | |
| 44 | RA (T) | Large ribosomal subunit protein bL21 | polymer | 103 | 11055.9 | 1 | UniProt (A0R151) Pfam (PF00829) | Mycolicibacterium smegmatis MC2 155 | |
| 45 | SA (U) | Large ribosomal subunit protein uL22 | polymer | 153 | 16353.6 | 1 | UniProt (A0QSD6) Pfam (PF00237) | Mycolicibacterium smegmatis MC2 155 | |
| 46 | TA (V) | Large ribosomal subunit protein uL23 | polymer | 100 | 11047.8 | 1 | UniProt (A0QSD3) Pfam (PF00276) | Mycolicibacterium smegmatis MC2 155 | |
| 47 | UA (W) | 50S ribosomal protein L24 | polymer | 105 | 11228.9 | 1 | UniProt (A0QSG0) Pfam (PF00467) Pfam (PF17136) | Mycolicibacterium smegmatis MC2 155 | |
| 48 | VA (X) | 50S ribosomal protein L25 | polymer | 215 | 22571.1 | 1 | UniProt (A0R3D2) Pfam (PF01386) Pfam (PF14693) | Mycolicibacterium smegmatis MC2 155 | General stress protein CTC |
| 49 | WA (Y) | 50S ribosomal protein L27 | polymer | 88 | 9249.6 | 1 | UniProt (A0R150) Pfam (PF01016) | Mycolicibacterium smegmatis MC2 155 | |
| 50 | XA (Z) | Large ribosomal subunit protein bL28 | polymer | 64 | 6891.0 | 1 | UniProt (I7FJ52) Pfam (PF00830) UniProt (by SIFTS) (A0QV03) | Mycolicibacterium smegmatis MC2 155 | |
| 51 | YA (1) | 50S ribosomal protein L29 | polymer | 77 | 8790.9 | 1 | UniProt (A0QSD9) Pfam (PF00831) | Mycolicibacterium smegmatis MC2 155 | |
| 52 | ZA (2) | 50S ribosomal protein L30 | polymer | 61 | 7022.1 | 1 | UniProt (A0QSG7) Pfam (PF00327) | Mycolicibacterium smegmatis MC2 155 | |
| 53 | AB (3) | Large ribosomal subunit protein bL31 | polymer | 75 | 8312.5 | 1 | UniProt (A0R215) Pfam (PF01197) | Mycolicibacterium smegmatis MC2 155 | |
| 54 | BB (4) | 50S ribosomal protein L32 | polymer | 57 | 6467.7 | 1 | UniProt (A0R3I9) Pfam (PF01783) | Mycolicibacterium smegmatis MC2 155 | |
| 55 | CB (5) | Large ribosomal subunit protein bL33A | polymer | 55 | 6468.5 | 1 | UniProt (A0QS39) Pfam (PF00471) | Mycolicibacterium smegmatis MC2 155 | |
| 56 | DB (6) | 50S ribosomal protein L34 | polymer | 47 | 5522.6 | 1 | UniProt (A0R7K0) Pfam (PF00468) | Mycolicibacterium smegmatis MC2 155 | |
| 57 | EB (7) | 50S ribosomal protein L35 | polymer | 64 | 7298.5 | 1 | UniProt (A0QYU7) Pfam (PF01632) | Mycolicibacterium smegmatis MC2 155 | |
| 58 | FB (8) | 50S ribosomal protein L36 | polymer | 37 | 4341.3 | 1 | UniProt (A0QSL4) Pfam (PF00444) | Mycolicibacterium smegmatis MC2 155 | |
| 59 | GB (9) | 50S Ribosomal Protein L27 | polymer | 24 | 2841.4 | 1 | UniProt (A0QTP4) | Mycolicibacterium smegmatis MC2 155 | |
| 60 | HB (x) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) | |||
| 61 | IB, JB (Z, 5) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 59 |
| Total formula weight | 2405068.7 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 574.0 | |
| All* | Total formula weight | 2405642.8 |
