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8V3P

CCP5 in complex with Glu-P-peptide 2 transition state analog

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Cytosolic carboxypeptidase-like protein 5polymer52459170.71UniProt (Q8NDL9)
Pfam (PF18027)
Pfam (PF00246)
Homo sapiens (human)ATP/GTP-binding protein-like 5,Protein deglutamylase CCP5
2B
(I)
Tubulin beta-2A chainpolymer151905.71UniProt (Q13885)Homo sapiensTubulin beta class IIa
3C
(A)
ZINC IONnon-polymer65.41Chemie (ZN)
4D
(A)
waterwater18.069Chemie (HOH)
Sequence modifications
A: 2 - 338 (UniProt: Q8NDL9)
PDBExternal DatabaseDetails
Asn 1-expression tag
A: 425 - 605 (UniProt: Q8NDL9)
PDBExternal DatabaseDetails
Ser 339-linker
Gly 340-linker
Ser 422-linker
Gly 423-linker
Gly 424-linker
Ala 516Glu 516engineered mutation
I: 1 - 15 (UniProt: Q13885)
PDBExternal DatabaseDetails
Bix 5Glu 435engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight61076.3
Non-Polymers*Number of molecules1
Total formula weight65.4
All*Total formula weight61141.8
*Water molecules are not included.

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PDB entries from 2025-10-29

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