8V0U
SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer 4 (S-GSAS-Omicron-XBB.1.5)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1284 | 142232.5 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
2 | D, E, F, G, H... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 6 | In PDB GlyTouCan (G42666HT) | |||
3 | B, C, A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 27 | Chemie (NAG) |
Sequence modifications
A, B, C: 4 - 1208 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Ile 22 | Thr 19 | conflict |
- | Leu 24 | deletion |
- | Pro 25 | deletion |
- | Pro 26 | deletion |
Ser 27 | Ala 27 | conflict |
Ala 83 | Val 83 | conflict |
Asp 143 | Gly 142 | conflict |
- | Tyr 144 | deletion |
Gln 146 | His 146 | conflict |
Glu 183 | Gln 183 | conflict |
Glu 213 | Val 213 | conflict |
Val 252 | Gly 252 | conflict |
His 339 | Gly 339 | conflict |
Thr 346 | Arg 346 | conflict |
Ile 368 | Leu 368 | conflict |
Phe 371 | Ser 371 | conflict |
Pro 373 | Ser 373 | conflict |
Phe 375 | Ser 375 | conflict |
Ala 376 | Thr 376 | conflict |
Asn 405 | Asp 405 | conflict |
Ser 408 | Arg 408 | conflict |
Asn 417 | Lys 417 | conflict |
Lys 440 | Asn 440 | conflict |
Pro 445 | Val 445 | conflict |
Ser 446 | Gly 446 | conflict |
Lys 460 | Asn 460 | conflict |
Asn 477 | Ser 477 | conflict |
Lys 478 | Thr 478 | conflict |
Ala 484 | Glu 484 | conflict |
Pro 486 | Phe 486 | conflict |
Ser 490 | Phe 490 | conflict |
Arg 498 | Gln 498 | conflict |
Tyr 501 | Asn 501 | conflict |
His 505 | Tyr 505 | conflict |
Gly 614 | Asp 614 | conflict |
Tyr 655 | His 655 | conflict |
Lys 679 | Asn 679 | conflict |
His 681 | Pro 681 | conflict |
Gly 682 | Arg 682 | conflict |
Ser 683 | Arg 683 | conflict |
Ser 685 | Arg 685 | conflict |
Lys 764 | Asn 764 | conflict |
Tyr 796 | Asp 796 | conflict |
His 954 | Gln 954 | conflict |
Lys 969 | Asn 969 | conflict |
Gly 1209 | - | expression tag |
Ser 1210 | - | expression tag |
Gly 1211 | - | expression tag |
Tyr 1212 | - | expression tag |
Ile 1213 | - | expression tag |
Pro 1214 | - | expression tag |
Glu 1215 | - | expression tag |
Ala 1216 | - | expression tag |
Pro 1217 | - | expression tag |
Arg 1218 | - | expression tag |
Asp 1219 | - | expression tag |
Gly 1220 | - | expression tag |
Gln 1221 | - | expression tag |
Ala 1222 | - | expression tag |
Tyr 1223 | - | expression tag |
Val 1224 | - | expression tag |
Arg 1225 | - | expression tag |
Lys 1226 | - | expression tag |
Asp 1227 | - | expression tag |
Gly 1228 | - | expression tag |
Glu 1229 | - | expression tag |
Trp 1230 | - | expression tag |
Val 1231 | - | expression tag |
Leu 1232 | - | expression tag |
Leu 1233 | - | expression tag |
Ser 1234 | - | expression tag |
Thr 1235 | - | expression tag |
Phe 1236 | - | expression tag |
Leu 1237 | - | expression tag |
Gly 1238 | - | expression tag |
Arg 1239 | - | expression tag |
Ser 1240 | - | expression tag |
Leu 1241 | - | expression tag |
Glu 1242 | - | expression tag |
Val 1243 | - | expression tag |
Leu 1244 | - | expression tag |
Phe 1245 | - | expression tag |
Gln 1246 | - | expression tag |
Gly 1247 | - | expression tag |
Pro 1248 | - | expression tag |
Gly 1249 | - | expression tag |
His 1250 | - | expression tag |
His 1251 | - | expression tag |
His 1252 | - | expression tag |
His 1253 | - | expression tag |
His 1254 | - | expression tag |
His 1255 | - | expression tag |
His 1256 | - | expression tag |
His 1257 | - | expression tag |
Ser 1258 | - | expression tag |
Ala 1259 | - | expression tag |
Trp 1260 | - | expression tag |
Ser 1261 | - | expression tag |
His 1262 | - | expression tag |
Pro 1263 | - | expression tag |
Gln 1264 | - | expression tag |
Phe 1265 | - | expression tag |
Glu 1266 | - | expression tag |
Lys 1267 | - | expression tag |
Gly 1268 | - | expression tag |
Gly 1269 | - | expression tag |
Gly 1270 | - | expression tag |
Ser 1271 | - | expression tag |
Gly 1272 | - | expression tag |
Gly 1273 | - | expression tag |
Gly 1274 | - | expression tag |
Gly 1275 | - | expression tag |
Ser 1276 | - | expression tag |
Gly 1277 | - | expression tag |
Gly 1278 | - | expression tag |
Ser 1279 | - | expression tag |
Ala 1280 | - | expression tag |
Trp 1281 | - | expression tag |
Ser 1282 | - | expression tag |
His 1283 | - | expression tag |
Pro 1284 | - | expression tag |
Gln 1285 | - | expression tag |
Phe 1286 | - | expression tag |
Glu 1287 | - | expression tag |
Lys 1288 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 426697.6 | |
Branched | Number of molecules | 6 |
Total formula weight | 2546.4 | |
Non-Polymers* | Number of molecules | 27 |
Total formula weight | 5972.6 | |
All* | Total formula weight | 435216.6 |